Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2389

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2387 and Shewana3_2388 are separated by 21 nucleotidesShewana3_2388 and Shewana3_2389 are separated by 130 nucleotidesShewana3_2389 and Shewana3_2390 overlap by 8 nucleotidesShewana3_2390 and Shewana3_2391 are separated by 142 nucleotides Shewana3_2387: Shewana3_2387 - alpha/beta hydrolase fold (RefSeq), at 2,866,785 to 2,867,651 _2387 Shewana3_2388: Shewana3_2388 - hypothetical protein (RefSeq), at 2,867,673 to 2,868,485 _2388 Shewana3_2389: Shewana3_2389 - hypothetical protein (RefSeq), at 2,868,616 to 2,869,323 _2389 Shewana3_2390: Shewana3_2390 - hypothetical protein (RefSeq), at 2,869,316 to 2,869,624 _2390 Shewana3_2391: Shewana3_2391 - peptidase M22, glycoprotease (RefSeq), at 2,869,767 to 2,870,477 _2391 Position (kb) 2868 2869 2870Strain fitness (log2 ratio) -2 -1 0 1 2at 2867.617 kb on - strandat 2867.751 kb on + strandat 2867.833 kb on - strand, within Shewana3_2388at 2868.222 kb on + strand, within Shewana3_2388at 2868.400 kb on + strand, within Shewana3_2388at 2868.426 kb on + strandat 2868.434 kb on - strandat 2868.434 kb on - strandat 2868.434 kb on - strandat 2868.804 kb on + strand, within Shewana3_2389at 2868.872 kb on + strand, within Shewana3_2389at 2868.919 kb on + strand, within Shewana3_2389at 2868.927 kb on - strand, within Shewana3_2389at 2869.063 kb on + strand, within Shewana3_2389at 2869.149 kb on + strand, within Shewana3_2389at 2869.400 kb on + strand, within Shewana3_2390at 2869.472 kb on + strand, within Shewana3_2390at 2869.653 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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2,867,617 - -0.5
2,867,751 + -2.3
2,867,833 - Shewana3_2388 0.20 +0.8
2,868,222 + Shewana3_2388 0.68 -0.5
2,868,400 + Shewana3_2388 0.89 +0.5
2,868,426 + +0.5
2,868,434 - +2.1
2,868,434 - -1.8
2,868,434 - +1.5
2,868,804 + Shewana3_2389 0.27 +0.5
2,868,872 + Shewana3_2389 0.36 -0.5
2,868,919 + Shewana3_2389 0.43 +0.5
2,868,927 - Shewana3_2389 0.44 +0.5
2,869,063 + Shewana3_2389 0.63 +0.1
2,869,149 + Shewana3_2389 0.75 -1.6
2,869,400 + Shewana3_2390 0.27 +0.6
2,869,472 + Shewana3_2390 0.50 +1.0
2,869,653 - -1.5

Or see this region's nucleotide sequence