Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2226

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2225 and Shewana3_2226 are separated by 57 nucleotidesShewana3_2226 and Shewana3_2227 are separated by 240 nucleotides Shewana3_2225: Shewana3_2225 - secretion protein HlyD family protein (RefSeq), at 2,675,095 to 2,676,150 _2225 Shewana3_2226: Shewana3_2226 - MarR family transcriptional regulator (RefSeq), at 2,676,208 to 2,676,642 _2226 Shewana3_2227: Shewana3_2227 - diguanylate cyclase (RefSeq), at 2,676,883 to 2,677,911 _2227 Position (kb) 2676 2677Strain fitness (log2 ratio) -1 0 1 2at 2675.371 kb on - strand, within Shewana3_2225at 2675.459 kb on - strand, within Shewana3_2225at 2675.529 kb on - strand, within Shewana3_2225at 2676.260 kb on - strand, within Shewana3_2226at 2676.292 kb on + strand, within Shewana3_2226at 2676.405 kb on + strand, within Shewana3_2226at 2676.418 kb on - strand, within Shewana3_2226at 2676.450 kb on + strand, within Shewana3_2226at 2676.491 kb on - strand, within Shewana3_2226at 2676.612 kb on - strandat 2677.065 kb on + strand, within Shewana3_2227at 2677.149 kb on + strand, within Shewana3_2227at 2677.199 kb on + strand, within Shewana3_2227at 2677.214 kb on - strand, within Shewana3_2227at 2677.245 kb on + strand, within Shewana3_2227at 2677.524 kb on + strand, within Shewana3_2227at 2677.524 kb on + strand, within Shewana3_2227

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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2,675,371 - Shewana3_2225 0.26 +0.6
2,675,459 - Shewana3_2225 0.34 -1.0
2,675,529 - Shewana3_2225 0.41 -1.0
2,676,260 - Shewana3_2226 0.12 -1.7
2,676,292 + Shewana3_2226 0.19 -1.0
2,676,405 + Shewana3_2226 0.45 +0.6
2,676,418 - Shewana3_2226 0.48 -0.4
2,676,450 + Shewana3_2226 0.56 +0.6
2,676,491 - Shewana3_2226 0.65 -1.0
2,676,612 - +1.4
2,677,065 + Shewana3_2227 0.18 +0.6
2,677,149 + Shewana3_2227 0.26 -1.0
2,677,199 + Shewana3_2227 0.31 +0.6
2,677,214 - Shewana3_2227 0.32 +1.9
2,677,245 + Shewana3_2227 0.35 +0.6
2,677,524 + Shewana3_2227 0.62 +0.6
2,677,524 + Shewana3_2227 0.62 +0.6

Or see this region's nucleotide sequence