Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2154 and Shewana3_2155 are separated by 15 nucleotides Shewana3_2155 and Shewana3_2156 are separated by 218 nucleotides Shewana3_2156 and Shewana3_2157 are separated by 169 nucleotides Shewana3_2157 and Shewana3_2158 are separated by 132 nucleotides
Shewana3_2154: Shewana3_2154 - acyl-CoA dehydrogenase (RefSeq), at 2,580,903 to 2,583,182
_2154
Shewana3_2155: Shewana3_2155 - TetR family transcriptional regulator (RefSeq), at 2,583,198 to 2,583,836
_2155
Shewana3_2156: Shewana3_2156 - peptidase M2, peptidyl-dipeptidase A (RefSeq), at 2,584,055 to 2,585,914
_2156
Shewana3_2157: Shewana3_2157 - Smr protein/MutS2 (RefSeq), at 2,586,084 to 2,586,674
_2157
Shewana3_2158: Shewana3_2158 - hypothetical protein (RefSeq), at 2,586,807 to 2,587,385
_2158
Position (kb)
2584
2585
2586 Strain fitness (log2 ratio)
-1
0
1
2 at 2583.183 kb on + strand at 2583.442 kb on - strand, within Shewana3_2155 at 2583.554 kb on - strand, within Shewana3_2155 at 2583.566 kb on - strand, within Shewana3_2155 at 2583.655 kb on - strand, within Shewana3_2155 at 2583.668 kb on - strand, within Shewana3_2155 at 2583.668 kb on - strand, within Shewana3_2155 at 2584.093 kb on + strand at 2584.093 kb on + strand at 2584.093 kb on + strand at 2584.095 kb on + strand at 2584.103 kb on - strand at 2584.107 kb on + strand at 2584.115 kb on - strand at 2584.201 kb on - strand at 2584.438 kb on - strand, within Shewana3_2156 at 2584.504 kb on + strand, within Shewana3_2156 at 2584.517 kb on + strand, within Shewana3_2156 at 2584.517 kb on + strand, within Shewana3_2156 at 2584.525 kb on - strand, within Shewana3_2156 at 2584.551 kb on - strand, within Shewana3_2156 at 2584.673 kb on - strand, within Shewana3_2156 at 2585.247 kb on + strand, within Shewana3_2156 at 2585.255 kb on - strand, within Shewana3_2156 at 2585.304 kb on - strand, within Shewana3_2156 at 2585.343 kb on + strand, within Shewana3_2156 at 2585.362 kb on + strand, within Shewana3_2156 at 2585.677 kb on - strand, within Shewana3_2156 at 2585.800 kb on - strand at 2585.945 kb on - strand at 2585.960 kb on + strand at 2585.960 kb on + strand at 2585.968 kb on - strand at 2585.968 kb on - strand at 2586.135 kb on - strand at 2586.135 kb on - strand at 2586.150 kb on - strand, within Shewana3_2157 at 2586.150 kb on - strand, within Shewana3_2157 at 2586.284 kb on - strand, within Shewana3_2157 at 2586.411 kb on - strand, within Shewana3_2157 at 2586.418 kb on + strand, within Shewana3_2157 at 2586.613 kb on + strand, within Shewana3_2157
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 2,583,183 + -0.4 2,583,442 - Shewana3_2155 0.38 +1.0 2,583,554 - Shewana3_2155 0.56 +0.4 2,583,566 - Shewana3_2155 0.58 +0.5 2,583,655 - Shewana3_2155 0.72 -0.1 2,583,668 - Shewana3_2155 0.74 +0.2 2,583,668 - Shewana3_2155 0.74 +0.5 2,584,093 + +0.6 2,584,093 + +1.0 2,584,093 + -0.4 2,584,095 + -0.2 2,584,103 - +0.6 2,584,107 + +0.1 2,584,115 - +0.6 2,584,201 - +0.6 2,584,438 - Shewana3_2156 0.21 +0.6 2,584,504 + Shewana3_2156 0.24 -0.4 2,584,517 + Shewana3_2156 0.25 +0.6 2,584,517 + Shewana3_2156 0.25 -1.4 2,584,525 - Shewana3_2156 0.25 +0.6 2,584,551 - Shewana3_2156 0.27 +0.6 2,584,673 - Shewana3_2156 0.33 +0.6 2,585,247 + Shewana3_2156 0.64 -0.4 2,585,255 - Shewana3_2156 0.65 +0.6 2,585,304 - Shewana3_2156 0.67 +0.6 2,585,343 + Shewana3_2156 0.69 -0.4 2,585,362 + Shewana3_2156 0.70 -0.4 2,585,677 - Shewana3_2156 0.87 -0.4 2,585,800 - +0.6 2,585,945 - +0.6 2,585,960 + +2.0 2,585,960 + +0.6 2,585,968 - +0.6 2,585,968 - +0.6 2,586,135 - +0.3 2,586,135 - +1.6 2,586,150 - Shewana3_2157 0.11 +2.2 2,586,150 - Shewana3_2157 0.11 -0.9 2,586,284 - Shewana3_2157 0.34 +1.0 2,586,411 - Shewana3_2157 0.55 +1.0 2,586,418 + Shewana3_2157 0.57 +0.6 2,586,613 + Shewana3_2157 0.90 +0.6
Or see this region's nucleotide sequence