Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2068 and Shewana3_2069 are separated by 109 nucleotides Shewana3_2069 and Shewana3_2070 are separated by 149 nucleotides
Shewana3_2068: Shewana3_2068 - GntR family transcriptional regulator (RefSeq), at 2,475,530 to 2,476,246
_2068
Shewana3_2069: Shewana3_2069 - glycoside hydrolase family protein (RefSeq), at 2,476,356 to 2,477,303
_2069
Shewana3_2070: Shewana3_2070 - L-arabonate dehydratase (EC 4.2.1.25) (from data) , at 2,477,453 to 2,479,213
_2070
Position (kb)
2476
2477
2478 Strain fitness (log2 ratio)
-1
0
1 at 2475.367 kb on - strand at 2475.513 kb on - strand at 2475.563 kb on + strand at 2475.801 kb on + strand, within Shewana3_2068 at 2475.903 kb on + strand, within Shewana3_2068 at 2476.059 kb on + strand, within Shewana3_2068 at 2476.391 kb on - strand at 2477.034 kb on - strand, within Shewana3_2069 at 2477.072 kb on - strand, within Shewana3_2069 at 2477.521 kb on + strand at 2477.647 kb on + strand, within Shewana3_2070 at 2477.944 kb on + strand, within Shewana3_2070 at 2477.950 kb on + strand, within Shewana3_2070 at 2477.952 kb on - strand, within Shewana3_2070 at 2478.094 kb on + strand, within Shewana3_2070 at 2478.117 kb on + strand, within Shewana3_2070 at 2478.287 kb on + strand, within Shewana3_2070
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 2,475,367 - +0.6 2,475,513 - +0.6 2,475,563 + -0.9 2,475,801 + Shewana3_2068 0.38 +0.6 2,475,903 + Shewana3_2068 0.52 -0.2 2,476,059 + Shewana3_2068 0.74 +1.0 2,476,391 - +0.4 2,477,034 - Shewana3_2069 0.72 -0.4 2,477,072 - Shewana3_2069 0.76 +0.6 2,477,521 + -0.4 2,477,647 + Shewana3_2070 0.11 -0.9 2,477,944 + Shewana3_2070 0.28 +0.6 2,477,950 + Shewana3_2070 0.28 -0.7 2,477,952 - Shewana3_2070 0.28 +0.6 2,478,094 + Shewana3_2070 0.36 -0.4 2,478,117 + Shewana3_2070 0.38 +0.1 2,478,287 + Shewana3_2070 0.47 +0.6
Or see this region's nucleotide sequence