Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1928 and Shewana3_1929 are separated by 205 nucleotides Shewana3_1929 and Shewana3_1930 are separated by 36 nucleotides Shewana3_1930 and Shewana3_1931 are separated by 260 nucleotides
Shewana3_1928: Shewana3_1928 - hypothetical protein (RefSeq), at 2,293,035 to 2,293,550
_1928
Shewana3_1929: Shewana3_1929 - alkylhydroperoxidase (RefSeq), at 2,293,756 to 2,294,205
_1929
Shewana3_1930: Shewana3_1930 - AraC family transcriptional regulator (RefSeq), at 2,294,242 to 2,295,132
_1930
Shewana3_1931: Shewana3_1931 - alpha-glucosidase (RefSeq), at 2,295,393 to 2,297,504
_1931
Position (kb)
2294
2295
2296 Strain fitness (log2 ratio)
-2
-1
0
1 at 2293.277 kb on + strand, within Shewana3_1928 at 2293.387 kb on + strand, within Shewana3_1928 at 2293.488 kb on + strand, within Shewana3_1928 at 2293.764 kb on + strand at 2294.126 kb on + strand, within Shewana3_1929 at 2294.137 kb on + strand, within Shewana3_1929 at 2294.601 kb on - strand, within Shewana3_1930 at 2294.652 kb on + strand, within Shewana3_1930 at 2294.746 kb on - strand, within Shewana3_1930 at 2294.844 kb on - strand, within Shewana3_1930 at 2294.985 kb on + strand, within Shewana3_1930 at 2295.213 kb on + strand at 2295.547 kb on - strand at 2295.549 kb on + strand at 2295.589 kb on - strand at 2295.941 kb on + strand, within Shewana3_1931 at 2295.941 kb on + strand, within Shewana3_1931 at 2295.995 kb on - strand, within Shewana3_1931 at 2296.039 kb on - strand, within Shewana3_1931
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 2,293,277 + Shewana3_1928 0.47 +0.6 2,293,387 + Shewana3_1928 0.68 -0.4 2,293,488 + Shewana3_1928 0.88 +0.6 2,293,764 + +0.6 2,294,126 + Shewana3_1929 0.82 +0.6 2,294,137 + Shewana3_1929 0.85 +0.6 2,294,601 - Shewana3_1930 0.40 -0.4 2,294,652 + Shewana3_1930 0.46 -1.4 2,294,746 - Shewana3_1930 0.57 -1.3 2,294,844 - Shewana3_1930 0.68 -0.4 2,294,985 + Shewana3_1930 0.83 -1.0 2,295,213 + -2.0 2,295,547 - -0.7 2,295,549 + +1.6 2,295,589 - +0.2 2,295,941 + Shewana3_1931 0.26 +0.6 2,295,941 + Shewana3_1931 0.26 +0.6 2,295,995 - Shewana3_1931 0.29 -1.4 2,296,039 - Shewana3_1931 0.31 -0.3
Or see this region's nucleotide sequence