Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1908 and Shewana3_1909 are separated by 438 nucleotides Shewana3_1909 and Shewana3_1910 are separated by 153 nucleotides
Shewana3_1908: Shewana3_1908 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,264,637 to 2,265,824
_1908
Shewana3_1909: Shewana3_1909 - carbonic anhydrase (RefSeq), at 2,266,263 to 2,266,868
_1909
Shewana3_1910: Shewana3_1910 - alpha/beta hydrolase fold (RefSeq), at 2,267,022 to 2,267,852
_1910
Position (kb)
2266
2267 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2265.299 kb on - strand, within Shewana3_1908 at 2265.587 kb on - strand, within Shewana3_1908 at 2265.973 kb on + strand at 2265.995 kb on + strand at 2266.025 kb on - strand at 2266.057 kb on + strand at 2266.060 kb on - strand at 2266.083 kb on - strand at 2266.090 kb on + strand at 2266.586 kb on + strand, within Shewana3_1909 at 2266.641 kb on + strand, within Shewana3_1909 at 2266.999 kb on - strand at 2266.999 kb on - strand at 2267.192 kb on + strand, within Shewana3_1910 at 2267.197 kb on + strand, within Shewana3_1910 at 2267.200 kb on - strand, within Shewana3_1910 at 2267.461 kb on + strand, within Shewana3_1910 at 2267.463 kb on + strand, within Shewana3_1910 at 2267.604 kb on - strand, within Shewana3_1910 at 2267.621 kb on + strand, within Shewana3_1910 at 2267.632 kb on - strand, within Shewana3_1910 at 2267.651 kb on - strand, within Shewana3_1910
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 2,265,299 - Shewana3_1908 0.56 +0.2 2,265,587 - Shewana3_1908 0.80 -0.4 2,265,973 + -0.0 2,265,995 + -0.5 2,266,025 - +0.5 2,266,057 + +2.9 2,266,060 - +0.5 2,266,083 - -0.3 2,266,090 + +0.5 2,266,586 + Shewana3_1909 0.53 +0.5 2,266,641 + Shewana3_1909 0.62 -0.5 2,266,999 - +0.6 2,266,999 - +1.0 2,267,192 + Shewana3_1910 0.20 +0.5 2,267,197 + Shewana3_1910 0.21 +1.3 2,267,200 - Shewana3_1910 0.21 -0.3 2,267,461 + Shewana3_1910 0.53 -0.8 2,267,463 + Shewana3_1910 0.53 +0.5 2,267,604 - Shewana3_1910 0.70 -0.5 2,267,621 + Shewana3_1910 0.72 +0.5 2,267,632 - Shewana3_1910 0.73 +1.5 2,267,651 - Shewana3_1910 0.76 -0.3
Or see this region's nucleotide sequence