Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1772 and Shewana3_1773 overlap by 14 nucleotides Shewana3_1773 and Shewana3_1774 are separated by 1 nucleotides Shewana3_1774 and Shewana3_1775 are separated by 206 nucleotides Shewana3_1775 and Shewana3_1776 are separated by 15 nucleotides
Shewana3_1772: Shewana3_1772 - hypothetical protein (RefSeq), at 2,086,673 to 2,089,309
_1772
Shewana3_1773: Shewana3_1773 - paraquat-inducible protein A (RefSeq), at 2,089,296 to 2,089,913
_1773
Shewana3_1774: Shewana3_1774 - paraquat-inducible protein A (RefSeq), at 2,089,915 to 2,090,550
_1774
Shewana3_1775: Shewana3_1775 - YebG family protein (RefSeq), at 2,090,757 to 2,091,056
_1775
Shewana3_1776: Shewana3_1776 - putative GAF sensor protein (RefSeq), at 2,091,072 to 2,091,530
_1776
Position (kb)
2089
2090
2091 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2088.952 kb on + strand, within Shewana3_1772 at 2088.967 kb on - strand, within Shewana3_1772 at 2089.216 kb on + strand at 2089.224 kb on - strand at 2089.242 kb on + strand at 2089.326 kb on + strand at 2089.638 kb on + strand, within Shewana3_1773 at 2089.638 kb on + strand, within Shewana3_1773 at 2089.646 kb on + strand, within Shewana3_1773 at 2089.734 kb on - strand, within Shewana3_1773 at 2089.808 kb on + strand, within Shewana3_1773 at 2090.280 kb on + strand, within Shewana3_1774 at 2090.389 kb on - strand, within Shewana3_1774 at 2090.690 kb on - strand at 2090.847 kb on + strand, within Shewana3_1775 at 2090.875 kb on - strand, within Shewana3_1775 at 2091.269 kb on - strand, within Shewana3_1776 at 2091.281 kb on + strand, within Shewana3_1776 at 2091.281 kb on + strand, within Shewana3_1776 at 2091.281 kb on + strand, within Shewana3_1776
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 2,088,952 + Shewana3_1772 0.86 +0.5 2,088,967 - Shewana3_1772 0.87 -1.4 2,089,216 + +0.5 2,089,224 - +0.5 2,089,242 + +0.5 2,089,326 + +0.5 2,089,638 + Shewana3_1773 0.55 -0.5 2,089,638 + Shewana3_1773 0.55 +0.5 2,089,646 + Shewana3_1773 0.57 +0.5 2,089,734 - Shewana3_1773 0.71 +0.5 2,089,808 + Shewana3_1773 0.83 +0.5 2,090,280 + Shewana3_1774 0.57 +0.5 2,090,389 - Shewana3_1774 0.75 -3.4 2,090,690 - +0.5 2,090,847 + Shewana3_1775 0.30 -0.3 2,090,875 - Shewana3_1775 0.39 +0.5 2,091,269 - Shewana3_1776 0.43 +0.5 2,091,281 + Shewana3_1776 0.46 +0.1 2,091,281 + Shewana3_1776 0.46 -0.1 2,091,281 + Shewana3_1776 0.46 -0.3
Or see this region's nucleotide sequence