Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1166 and Shewana3_1167 are separated by 45 nucleotides Shewana3_1167 and Shewana3_1168 overlap by 1 nucleotides Shewana3_1168 and Shewana3_1169 overlap by 4 nucleotides
Shewana3_1166: Shewana3_1166 - deoxyribodipyrimidine photo-lyase type I (RefSeq), at 1,376,924 to 1,378,405
_1166
Shewana3_1167: Shewana3_1167 - transcriptional regulator-related protein (RefSeq), at 1,378,451 to 1,378,897
_1167
Shewana3_1168: Shewana3_1168 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,378,897 to 1,379,697
_1168
Shewana3_1169: Shewana3_1169 - amine oxidase (RefSeq), at 1,379,694 to 1,380,944
_1169
Position (kb)
1378
1379
1380 Strain fitness (log2 ratio)
-1
0
1
2 at 1378.056 kb on - strand, within Shewana3_1166 at 1378.065 kb on + strand, within Shewana3_1166 at 1378.079 kb on - strand, within Shewana3_1166 at 1378.122 kb on + strand, within Shewana3_1166 at 1378.319 kb on + strand at 1378.323 kb on - strand at 1378.325 kb on + strand at 1378.333 kb on - strand at 1378.467 kb on + strand at 1378.549 kb on + strand, within Shewana3_1167 at 1378.873 kb on + strand at 1378.882 kb on - strand at 1378.906 kb on + strand at 1378.920 kb on + strand at 1378.928 kb on - strand at 1378.930 kb on + strand at 1379.027 kb on - strand, within Shewana3_1168 at 1379.058 kb on + strand, within Shewana3_1168 at 1379.445 kb on - strand, within Shewana3_1168 at 1379.675 kb on + strand at 1379.743 kb on + strand at 1379.977 kb on - strand, within Shewana3_1169 at 1380.309 kb on + strand, within Shewana3_1169 at 1380.311 kb on + strand, within Shewana3_1169 at 1380.331 kb on + strand, within Shewana3_1169 at 1380.339 kb on - strand, within Shewana3_1169 at 1380.584 kb on + strand, within Shewana3_1169 at 1380.584 kb on + strand, within Shewana3_1169 at 1380.604 kb on - strand, within Shewana3_1169
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 1,378,056 - Shewana3_1166 0.76 +2.0 1,378,065 + Shewana3_1166 0.77 -0.1 1,378,079 - Shewana3_1166 0.78 -0.4 1,378,122 + Shewana3_1166 0.81 +0.3 1,378,319 + +0.9 1,378,323 - +0.7 1,378,325 + -0.3 1,378,333 - +0.2 1,378,467 + -0.4 1,378,549 + Shewana3_1167 0.22 +0.7 1,378,873 + +0.0 1,378,882 - -0.6 1,378,906 + -0.2 1,378,920 + +0.5 1,378,928 - -0.4 1,378,930 + -0.9 1,379,027 - Shewana3_1168 0.16 +0.3 1,379,058 + Shewana3_1168 0.20 -0.1 1,379,445 - Shewana3_1168 0.68 +0.4 1,379,675 + +0.1 1,379,743 + -0.1 1,379,977 - Shewana3_1169 0.23 +0.5 1,380,309 + Shewana3_1169 0.49 -0.2 1,380,311 + Shewana3_1169 0.49 -1.3 1,380,331 + Shewana3_1169 0.51 -0.1 1,380,339 - Shewana3_1169 0.52 -0.3 1,380,584 + Shewana3_1169 0.71 -0.7 1,380,584 + Shewana3_1169 0.71 +0.5 1,380,604 - Shewana3_1169 0.73 +0.7
Or see this region's nucleotide sequence