Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1081

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1079 and Shewana3_1080 are separated by 20 nucleotidesShewana3_1080 and Shewana3_1081 are separated by 113 nucleotidesShewana3_1081 and Shewana3_1082 are separated by 143 nucleotides Shewana3_1079: Shewana3_1079 - metal dependent phosphohydrolase (RefSeq), at 1,266,968 to 1,268,236 _1079 Shewana3_1080: Shewana3_1080 - hypothetical protein (RefSeq), at 1,268,257 to 1,268,769 _1080 Shewana3_1081: Shewana3_1081 - AraC family transcriptional regulator (RefSeq), at 1,268,883 to 1,269,650 _1081 Shewana3_1082: Shewana3_1082 - major facilitator transporter (RefSeq), at 1,269,794 to 1,270,972 _1082 Position (kb) 1268 1269 1270Strain fitness (log2 ratio) -2 -1 0 1 2at 1267.894 kb on - strand, within Shewana3_1079at 1268.013 kb on + strand, within Shewana3_1079at 1268.193 kb on - strandat 1268.255 kb on + strandat 1268.263 kb on - strandat 1268.336 kb on + strand, within Shewana3_1080at 1268.415 kb on + strand, within Shewana3_1080at 1268.461 kb on - strand, within Shewana3_1080at 1268.548 kb on - strand, within Shewana3_1080at 1268.576 kb on - strand, within Shewana3_1080at 1268.612 kb on + strand, within Shewana3_1080at 1268.673 kb on + strand, within Shewana3_1080at 1268.769 kb on + strandat 1269.206 kb on - strand, within Shewana3_1081at 1269.256 kb on - strand, within Shewana3_1081at 1269.278 kb on - strand, within Shewana3_1081at 1269.404 kb on + strand, within Shewana3_1081at 1269.549 kb on + strand, within Shewana3_1081at 1269.708 kb on + strandat 1269.708 kb on + strandat 1269.708 kb on + strandat 1270.035 kb on - strand, within Shewana3_1082at 1270.078 kb on + strand, within Shewana3_1082at 1270.115 kb on + strand, within Shewana3_1082at 1270.231 kb on + strand, within Shewana3_1082at 1270.246 kb on + strand, within Shewana3_1082at 1270.253 kb on + strand, within Shewana3_1082at 1270.597 kb on - strand, within Shewana3_1082at 1270.650 kb on + strand, within Shewana3_1082

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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1,267,894 - Shewana3_1079 0.73 +0.7
1,268,013 + Shewana3_1079 0.82 +0.7
1,268,193 - -0.3
1,268,255 + +0.7
1,268,263 - +0.7
1,268,336 + Shewana3_1080 0.15 -0.1
1,268,415 + Shewana3_1080 0.31 +1.2
1,268,461 - Shewana3_1080 0.40 -0.1
1,268,548 - Shewana3_1080 0.57 +0.9
1,268,576 - Shewana3_1080 0.62 +2.3
1,268,612 + Shewana3_1080 0.69 +1.5
1,268,673 + Shewana3_1080 0.81 +0.1
1,268,769 + -0.1
1,269,206 - Shewana3_1081 0.42 -0.8
1,269,256 - Shewana3_1081 0.49 -0.3
1,269,278 - Shewana3_1081 0.51 +2.3
1,269,404 + Shewana3_1081 0.68 -1.8
1,269,549 + Shewana3_1081 0.87 -0.0
1,269,708 + +0.3
1,269,708 + -0.7
1,269,708 + +0.5
1,270,035 - Shewana3_1082 0.20 -0.5
1,270,078 + Shewana3_1082 0.24 +0.1
1,270,115 + Shewana3_1082 0.27 -0.1
1,270,231 + Shewana3_1082 0.37 -0.7
1,270,246 + Shewana3_1082 0.38 +0.4
1,270,253 + Shewana3_1082 0.39 +0.0
1,270,597 - Shewana3_1082 0.68 -0.2
1,270,650 + Shewana3_1082 0.73 +0.7

Or see this region's nucleotide sequence