Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1058 and Shewana3_1059 are separated by 25 nucleotides Shewana3_1059 and Shewana3_1060 are separated by 100 nucleotides
Shewana3_1058: Shewana3_1058 - xanthine/uracil/vitamin C permease (RefSeq), at 1,240,579 to 1,241,931
_1058
Shewana3_1059: Shewana3_1059 - CBS domain-containing protein (RefSeq), at 1,241,957 to 1,242,388
_1059
Shewana3_1060: Shewana3_1060 - phospholipid/glycerol acyltransferase (RefSeq), at 1,242,489 to 1,244,363
_1060
Position (kb)
1241
1242
1243 Strain fitness (log2 ratio)
-2
-1
0
1 at 1241.294 kb on + strand, within Shewana3_1058 at 1241.791 kb on - strand, within Shewana3_1058 at 1241.801 kb on + strand at 1241.806 kb on + strand at 1241.809 kb on - strand at 1241.809 kb on - strand at 1241.830 kb on - strand at 1241.882 kb on + strand at 1242.200 kb on + strand, within Shewana3_1059 at 1242.200 kb on + strand, within Shewana3_1059 at 1242.427 kb on + strand at 1242.427 kb on + strand at 1242.427 kb on + strand at 1242.613 kb on - strand at 1242.749 kb on + strand, within Shewana3_1060 at 1242.771 kb on - strand, within Shewana3_1060 at 1242.771 kb on - strand, within Shewana3_1060 at 1242.775 kb on + strand, within Shewana3_1060 at 1242.818 kb on + strand, within Shewana3_1060 at 1242.818 kb on + strand, within Shewana3_1060 at 1242.818 kb on + strand, within Shewana3_1060 at 1243.028 kb on + strand, within Shewana3_1060
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 1,241,294 + Shewana3_1058 0.53 -0.0 1,241,791 - Shewana3_1058 0.90 -0.2 1,241,801 + +0.1 1,241,806 + +0.4 1,241,809 - +0.8 1,241,809 - +0.8 1,241,830 - -0.2 1,241,882 + -0.3 1,242,200 + Shewana3_1059 0.56 +0.0 1,242,200 + Shewana3_1059 0.56 -2.4 1,242,427 + +0.8 1,242,427 + -0.4 1,242,427 + -1.7 1,242,613 - -0.6 1,242,749 + Shewana3_1060 0.14 -0.6 1,242,771 - Shewana3_1060 0.15 -0.0 1,242,771 - Shewana3_1060 0.15 -0.8 1,242,775 + Shewana3_1060 0.15 +0.5 1,242,818 + Shewana3_1060 0.18 -1.4 1,242,818 + Shewana3_1060 0.18 +0.2 1,242,818 + Shewana3_1060 0.18 +0.2 1,243,028 + Shewana3_1060 0.29 +0.2
Or see this region's nucleotide sequence