Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0882 and Shewana3_0883 are separated by 374 nucleotides Shewana3_0883 and Shewana3_0884 are separated by 4 nucleotides
Shewana3_0882: Shewana3_0882 - extracellular solute-binding protein (RefSeq), at 1,028,163 to 1,028,897
_0882
Shewana3_0883: Shewana3_0883 - hypothetical protein (RefSeq), at 1,029,272 to 1,030,096
_0883
Shewana3_0884: Shewana3_0884 - LysR family transcriptional regulator (RefSeq), at 1,030,101 to 1,030,991
_0884
Position (kb)
1029
1030
1031 Strain fitness (log2 ratio)
-2
-1
0
1 at 1028.495 kb on - strand, within Shewana3_0882 at 1028.512 kb on - strand, within Shewana3_0882 at 1028.554 kb on - strand, within Shewana3_0882 at 1028.744 kb on - strand, within Shewana3_0882 at 1028.864 kb on + strand at 1028.934 kb on - strand at 1029.352 kb on + strand at 1029.413 kb on - strand, within Shewana3_0883 at 1029.619 kb on + strand, within Shewana3_0883 at 1029.621 kb on - strand, within Shewana3_0883 at 1029.705 kb on + strand, within Shewana3_0883 at 1029.755 kb on + strand, within Shewana3_0883 at 1029.768 kb on + strand, within Shewana3_0883 at 1029.803 kb on + strand, within Shewana3_0883 at 1029.810 kb on + strand, within Shewana3_0883 at 1030.033 kb on - strand at 1030.063 kb on - strand at 1030.155 kb on + strand at 1030.155 kb on + strand at 1030.251 kb on - strand, within Shewana3_0884 at 1030.316 kb on + strand, within Shewana3_0884 at 1030.423 kb on - strand, within Shewana3_0884 at 1030.587 kb on + strand, within Shewana3_0884 at 1030.595 kb on - strand, within Shewana3_0884 at 1030.736 kb on - strand, within Shewana3_0884 at 1030.776 kb on + strand, within Shewana3_0884 at 1030.784 kb on - strand, within Shewana3_0884 at 1030.816 kb on + strand, within Shewana3_0884 at 1030.888 kb on + strand, within Shewana3_0884 at 1030.888 kb on + strand, within Shewana3_0884 at 1030.888 kb on + strand, within Shewana3_0884 at 1030.896 kb on - strand, within Shewana3_0884 at 1030.896 kb on - strand, within Shewana3_0884 at 1031.074 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 1,028,495 - Shewana3_0882 0.45 +0.8 1,028,512 - Shewana3_0882 0.47 -1.2 1,028,554 - Shewana3_0882 0.53 +0.8 1,028,744 - Shewana3_0882 0.79 -1.0 1,028,864 + -0.1 1,028,934 - -1.1 1,029,352 + -0.2 1,029,413 - Shewana3_0883 0.17 -0.6 1,029,619 + Shewana3_0883 0.42 -0.1 1,029,621 - Shewana3_0883 0.42 +0.8 1,029,705 + Shewana3_0883 0.52 -0.3 1,029,755 + Shewana3_0883 0.59 +0.1 1,029,768 + Shewana3_0883 0.60 -0.6 1,029,803 + Shewana3_0883 0.64 +0.4 1,029,810 + Shewana3_0883 0.65 -0.9 1,030,033 - +0.2 1,030,063 - -0.1 1,030,155 + +0.0 1,030,155 + -0.4 1,030,251 - Shewana3_0884 0.17 +0.4 1,030,316 + Shewana3_0884 0.24 -0.2 1,030,423 - Shewana3_0884 0.36 -0.8 1,030,587 + Shewana3_0884 0.55 -1.2 1,030,595 - Shewana3_0884 0.55 -1.1 1,030,736 - Shewana3_0884 0.71 -0.9 1,030,776 + Shewana3_0884 0.76 +0.3 1,030,784 - Shewana3_0884 0.77 -0.5 1,030,816 + Shewana3_0884 0.80 -1.8 1,030,888 + Shewana3_0884 0.88 -0.1 1,030,888 + Shewana3_0884 0.88 -1.7 1,030,888 + Shewana3_0884 0.88 +0.2 1,030,896 - Shewana3_0884 0.89 -0.2 1,030,896 - Shewana3_0884 0.89 -0.8 1,031,074 - -0.4
Or see this region's nucleotide sequence