Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0754 and Shewana3_0755 are separated by 117 nucleotides Shewana3_0755 and Shewana3_0756 are separated by 72 nucleotides Shewana3_0756 and Shewana3_0757 are separated by 41 nucleotides
Shewana3_0754: Shewana3_0754 - TonB-dependent receptor (RefSeq), at 874,239 to 876,824
_0754
Shewana3_0755: Shewana3_0755 - glutathione S-transferase domain-containing protein (RefSeq), at 876,942 to 877,571
_0755
Shewana3_0756: Shewana3_0756 - hypothetical protein (RefSeq), at 877,644 to 878,144
_0756
Shewana3_0757: Shewana3_0757 - hypothetical protein (RefSeq), at 878,186 to 878,593
_0757
Position (kb) 876
877
878 Strain fitness (log2 ratio) -1
0
1
2 at 876.098 kb on + strand, within Shewana3_0754 at 876.154 kb on + strand, within Shewana3_0754 at 876.346 kb on + strand, within Shewana3_0754 at 876.354 kb on - strand, within Shewana3_0754 at 876.354 kb on - strand, within Shewana3_0754 at 876.457 kb on - strand, within Shewana3_0754 at 876.596 kb on - strand at 877.040 kb on + strand, within Shewana3_0755 at 877.319 kb on + strand, within Shewana3_0755 at 877.319 kb on + strand, within Shewana3_0755 at 877.327 kb on - strand, within Shewana3_0755 at 877.327 kb on - strand, within Shewana3_0755 at 877.329 kb on + strand, within Shewana3_0755 at 877.337 kb on - strand, within Shewana3_0755 at 877.565 kb on + strand at 877.751 kb on + strand, within Shewana3_0756 at 877.751 kb on + strand, within Shewana3_0756 at 877.814 kb on - strand, within Shewana3_0756 at 878.005 kb on - strand, within Shewana3_0756 at 878.526 kb on - strand, within Shewana3_0757
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 876,098 + Shewana3_0754 0.72 -0.1 876,154 + Shewana3_0754 0.74 -0.3 876,346 + Shewana3_0754 0.81 -0.3 876,354 - Shewana3_0754 0.82 -0.2 876,354 - Shewana3_0754 0.82 +0.3 876,457 - Shewana3_0754 0.86 +0.9 876,596 - -0.0 877,040 + Shewana3_0755 0.16 +0.9 877,319 + Shewana3_0755 0.60 +0.2 877,319 + Shewana3_0755 0.60 +0.0 877,327 - Shewana3_0755 0.61 -1.7 877,327 - Shewana3_0755 0.61 +2.2 877,329 + Shewana3_0755 0.61 +0.4 877,337 - Shewana3_0755 0.63 -0.9 877,565 + +0.2 877,751 + Shewana3_0756 0.21 +0.6 877,751 + Shewana3_0756 0.21 -0.9 877,814 - Shewana3_0756 0.34 +0.2 878,005 - Shewana3_0756 0.72 -0.0 878,526 - Shewana3_0757 0.83 +0.2
Or see this region's nucleotide sequence