Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0630 and Shewana3_0631 are separated by 259 nucleotides Shewana3_0631 and Shewana3_0632 are separated by 317 nucleotides
Shewana3_0630: Shewana3_0630 - no description, at 738,823 to 741,005
_0630
Shewana3_0631: Shewana3_0631 - hypothetical protein (RefSeq), at 741,265 to 741,966
_0631
Shewana3_0632: Shewana3_0632 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 742,284 to 743,582
_0632
Position (kb) 741
742 Strain fitness (log2 ratio) -1
0
1
2 at 740.284 kb on + strand, within Shewana3_0630 at 740.309 kb on + strand, within Shewana3_0630 at 740.381 kb on - strand, within Shewana3_0630 at 740.537 kb on - strand, within Shewana3_0630 at 740.633 kb on + strand, within Shewana3_0630 at 740.703 kb on + strand, within Shewana3_0630 at 740.703 kb on + strand, within Shewana3_0630 at 740.741 kb on + strand, within Shewana3_0630 at 740.792 kb on - strand at 740.908 kb on - strand at 740.923 kb on - strand at 740.969 kb on + strand at 740.975 kb on - strand at 740.994 kb on + strand at 740.997 kb on - strand at 741.161 kb on + strand at 741.245 kb on - strand at 741.425 kb on + strand, within Shewana3_0631 at 741.425 kb on + strand, within Shewana3_0631 at 741.425 kb on + strand, within Shewana3_0631 at 741.433 kb on - strand, within Shewana3_0631 at 741.448 kb on - strand, within Shewana3_0631 at 741.701 kb on - strand, within Shewana3_0631 at 741.763 kb on + strand, within Shewana3_0631 at 741.848 kb on - strand, within Shewana3_0631 at 741.994 kb on + strand at 742.023 kb on - strand at 742.089 kb on - strand at 742.137 kb on - strand at 742.163 kb on + strand at 742.163 kb on + strand at 742.171 kb on - strand at 742.436 kb on - strand, within Shewana3_0632 at 742.518 kb on - strand, within Shewana3_0632 at 742.826 kb on + strand, within Shewana3_0632 at 742.893 kb on - strand, within Shewana3_0632
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 740,284 + Shewana3_0630 0.67 -0.3 740,309 + Shewana3_0630 0.68 -0.2 740,381 - Shewana3_0630 0.71 -0.0 740,537 - Shewana3_0630 0.79 -0.2 740,633 + Shewana3_0630 0.83 -0.5 740,703 + Shewana3_0630 0.86 +0.1 740,703 + Shewana3_0630 0.86 -0.2 740,741 + Shewana3_0630 0.88 -0.1 740,792 - -0.3 740,908 - +0.4 740,923 - +0.9 740,969 + -1.1 740,975 - -0.6 740,994 + +1.9 740,997 - -0.1 741,161 + -0.3 741,245 - +0.9 741,425 + Shewana3_0631 0.23 -1.4 741,425 + Shewana3_0631 0.23 -0.6 741,425 + Shewana3_0631 0.23 -1.4 741,433 - Shewana3_0631 0.24 -0.1 741,448 - Shewana3_0631 0.26 +0.9 741,701 - Shewana3_0631 0.62 +0.9 741,763 + Shewana3_0631 0.71 -0.1 741,848 - Shewana3_0631 0.83 +0.9 741,994 + -0.3 742,023 - -0.6 742,089 - -0.3 742,137 - -0.4 742,163 + +1.7 742,163 + -0.9 742,171 - +0.2 742,436 - Shewana3_0632 0.12 -0.4 742,518 - Shewana3_0632 0.18 -0.3 742,826 + Shewana3_0632 0.42 +0.8 742,893 - Shewana3_0632 0.47 +0.0
Or see this region's nucleotide sequence