Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0146 and Shewana3_0147 are separated by 247 nucleotides Shewana3_0147 and hslO are separated by 202 nucleotides
Shewana3_0146: Shewana3_0146 - AbgT putative transporter (RefSeq), at 168,954 to 170,513
_0146
Shewana3_0147: Shewana3_0147 - phosphoenolpyruvate carboxykinase (RefSeq), at 170,761 to 172,302
_0147
Shewana3_0148: hslO - Hsp33-like chaperonin (RefSeq), at 172,505 to 173,365
hslO
Position (kb) 170
171
172
173 Strain fitness (log2 ratio) -1
0
1 at 169.941 kb on - strand, within Shewana3_0146 at 170.135 kb on - strand, within Shewana3_0146 at 170.180 kb on + strand, within Shewana3_0146 at 170.245 kb on - strand, within Shewana3_0146 at 170.888 kb on + strand at 170.945 kb on + strand, within Shewana3_0147 at 171.153 kb on - strand, within Shewana3_0147 at 171.153 kb on - strand, within Shewana3_0147 at 171.316 kb on - strand, within Shewana3_0147 at 171.343 kb on + strand, within Shewana3_0147 at 171.368 kb on - strand, within Shewana3_0147 at 171.441 kb on - strand, within Shewana3_0147 at 171.454 kb on + strand, within Shewana3_0147 at 171.622 kb on + strand, within Shewana3_0147 at 171.640 kb on - strand, within Shewana3_0147 at 171.654 kb on + strand, within Shewana3_0147 at 171.735 kb on - strand, within Shewana3_0147 at 171.958 kb on - strand, within Shewana3_0147 at 171.966 kb on - strand, within Shewana3_0147 at 172.062 kb on + strand, within Shewana3_0147 at 172.130 kb on + strand, within Shewana3_0147 at 172.224 kb on - strand at 172.252 kb on + strand at 172.270 kb on + strand at 172.309 kb on - strand at 172.479 kb on - strand at 172.491 kb on - strand at 172.596 kb on - strand, within hslO at 172.671 kb on - strand, within hslO at 172.933 kb on + strand, within hslO at 172.933 kb on + strand, within hslO at 172.951 kb on - strand, within hslO at 173.029 kb on + strand, within hslO at 173.029 kb on + strand, within hslO at 173.037 kb on - strand, within hslO at 173.092 kb on + strand, within hslO at 173.100 kb on - strand, within hslO at 173.151 kb on + strand, within hslO
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 169,941 - Shewana3_0146 0.63 -0.2 170,135 - Shewana3_0146 0.76 -0.3 170,180 + Shewana3_0146 0.79 -0.6 170,245 - Shewana3_0146 0.83 -0.2 170,888 + -0.5 170,945 + Shewana3_0147 0.12 -0.1 171,153 - Shewana3_0147 0.25 -0.0 171,153 - Shewana3_0147 0.25 -0.0 171,316 - Shewana3_0147 0.36 -0.0 171,343 + Shewana3_0147 0.38 +0.0 171,368 - Shewana3_0147 0.39 +0.2 171,441 - Shewana3_0147 0.44 -0.4 171,454 + Shewana3_0147 0.45 -0.4 171,622 + Shewana3_0147 0.56 +0.0 171,640 - Shewana3_0147 0.57 +0.0 171,654 + Shewana3_0147 0.58 +0.3 171,735 - Shewana3_0147 0.63 +0.2 171,958 - Shewana3_0147 0.78 -0.0 171,966 - Shewana3_0147 0.78 -1.0 172,062 + Shewana3_0147 0.84 +0.1 172,130 + Shewana3_0147 0.89 -0.9 172,224 - +0.2 172,252 + -0.1 172,270 + -0.7 172,309 - -0.2 172,479 - +0.2 172,491 - -0.0 172,596 - hslO Shewana3_0148 0.11 +0.2 172,671 - hslO Shewana3_0148 0.19 -0.7 172,933 + hslO Shewana3_0148 0.50 +0.2 172,933 + hslO Shewana3_0148 0.50 -0.2 172,951 - hslO Shewana3_0148 0.52 -0.0 173,029 + hslO Shewana3_0148 0.61 -0.7 173,029 + hslO Shewana3_0148 0.61 -0.2 173,037 - hslO Shewana3_0148 0.62 -0.6 173,092 + hslO Shewana3_0148 0.68 -0.1 173,100 - hslO Shewana3_0148 0.69 -0.8 173,151 + hslO Shewana3_0148 0.75 -0.1
Or see this region's nucleotide sequence