Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4284 and Shewana3_4285 are separated by 274 nucleotides Shewana3_4285 and Shewana3_4286 are separated by 136 nucleotides Shewana3_4286 and Shewana3_4287 overlap by 4 nucleotides
Shewana3_4284: Shewana3_4284 - integrase catalytic subunit (RefSeq), at 167,962 to 168,783
_4284
Shewana3_4285: Shewana3_4285 - hypothetical protein (RefSeq), at 169,058 to 169,498
_4285
Shewana3_4286: Shewana3_4286 - hypothetical protein (RefSeq), at 169,635 to 170,150
_4286
Shewana3_4287: Shewana3_4287 - CopA family copper resistance protein (RefSeq), at 170,147 to 172,075
_4287
Position (kb) 169
170
171 Strain fitness (log2 ratio) -1
0
1 at 168.644 kb on - strand, within Shewana3_4284 at 168.693 kb on - strand, within Shewana3_4284 at 168.693 kb on - strand, within Shewana3_4284 at 168.695 kb on + strand, within Shewana3_4284 at 168.810 kb on - strand at 168.887 kb on + strand at 168.913 kb on + strand at 168.913 kb on + strand at 168.966 kb on + strand at 168.973 kb on + strand at 168.973 kb on + strand at 168.973 kb on + strand at 168.981 kb on - strand at 168.981 kb on - strand at 169.098 kb on + strand at 169.276 kb on + strand, within Shewana3_4285 at 169.644 kb on + strand at 169.752 kb on - strand, within Shewana3_4286 at 169.789 kb on + strand, within Shewana3_4286 at 169.864 kb on + strand, within Shewana3_4286 at 169.874 kb on + strand, within Shewana3_4286 at 170.128 kb on + strand at 170.136 kb on - strand at 170.222 kb on + strand at 170.533 kb on - strand, within Shewana3_4287 at 170.698 kb on - strand, within Shewana3_4287 at 170.704 kb on - strand, within Shewana3_4287 at 170.984 kb on + strand, within Shewana3_4287 at 170.985 kb on + strand, within Shewana3_4287 at 170.996 kb on + strand, within Shewana3_4287
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 168,644 - Shewana3_4284 0.83 +0.1 168,693 - Shewana3_4284 0.89 -0.1 168,693 - Shewana3_4284 0.89 +0.2 168,695 + Shewana3_4284 0.89 -0.2 168,810 - -0.4 168,887 + -0.6 168,913 + -0.4 168,913 + -0.2 168,966 + -0.3 168,973 + -0.8 168,973 + +0.9 168,973 + +0.4 168,981 - +0.0 168,981 - +0.6 169,098 + +0.4 169,276 + Shewana3_4285 0.49 +0.0 169,644 + -1.0 169,752 - Shewana3_4286 0.23 -0.1 169,789 + Shewana3_4286 0.30 +0.2 169,864 + Shewana3_4286 0.44 +0.4 169,874 + Shewana3_4286 0.46 +0.7 170,128 + -0.2 170,136 - +0.3 170,222 + -0.3 170,533 - Shewana3_4287 0.20 +0.4 170,698 - Shewana3_4287 0.29 -0.1 170,704 - Shewana3_4287 0.29 +1.2 170,984 + Shewana3_4287 0.43 +0.2 170,985 + Shewana3_4287 0.43 +0.1 170,996 + Shewana3_4287 0.44 -0.9
Or see this region's nucleotide sequence