Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4227

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4227 and Shewana3_4228 are separated by 651 nucleotides Shewana3_4227: Shewana3_4227 - initiator RepB protein (RefSeq), at 100,875 to 102,038 _4227 Shewana3_4228: Shewana3_4228 - hypothetical protein (RefSeq), at 102,690 to 103,265 _4228 Position (kb) 100 101 102 103Strain fitness (log2 ratio) -1 0 1at 100.551 kb on - strandat 100.690 kb on + strandat 102.711 kb on - strandat 102.773 kb on + strand, within Shewana3_4228at 102.805 kb on + strand, within Shewana3_4228at 102.813 kb on - strand, within Shewana3_4228

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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100,551 - -0.9
100,690 + +1.5
102,711 - +0.9
102,773 + Shewana3_4228 0.14 +0.5
102,805 + Shewana3_4228 0.20 -0.1
102,813 - Shewana3_4228 0.21 +0.9

Or see this region's nucleotide sequence