Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25205

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25200 and RR42_RS25205 are separated by 375 nucleotidesRR42_RS25205 and RR42_RS25210 are separated by 172 nucleotides RR42_RS25200: RR42_RS25200 - TetR family transcriptional regulator, at 995,493 to 996,071 _RS25200 RR42_RS25205: RR42_RS25205 - glucose 1-dehydrogenase, at 996,447 to 997,181 _RS25205 RR42_RS25210: RR42_RS25210 - acetyl-CoA acetyltransferase, at 997,354 to 998,538 _RS25210 Position (kb) 996 997 998Strain fitness (log2 ratio) -2 -1 0 1 2at 995.453 kb on + strandat 995.453 kb on + strandat 995.454 kb on - strandat 995.546 kb on + strandat 995.546 kb on + strandat 995.634 kb on + strand, within RR42_RS25200at 995.634 kb on + strand, within RR42_RS25200at 995.634 kb on + strand, within RR42_RS25200at 995.635 kb on - strand, within RR42_RS25200at 995.635 kb on - strand, within RR42_RS25200at 995.636 kb on + strand, within RR42_RS25200at 995.763 kb on + strand, within RR42_RS25200at 995.764 kb on - strand, within RR42_RS25200at 996.084 kb on + strandat 996.084 kb on + strandat 996.084 kb on + strandat 996.084 kb on + strandat 996.085 kb on - strandat 996.085 kb on - strandat 996.145 kb on + strandat 996.299 kb on + strandat 996.355 kb on - strandat 996.355 kb on - strandat 996.355 kb on - strandat 996.355 kb on - strandat 996.618 kb on + strand, within RR42_RS25205at 996.619 kb on - strand, within RR42_RS25205at 996.619 kb on - strand, within RR42_RS25205at 996.709 kb on + strand, within RR42_RS25205at 996.872 kb on + strand, within RR42_RS25205at 996.900 kb on + strand, within RR42_RS25205at 996.901 kb on - strand, within RR42_RS25205at 996.901 kb on - strand, within RR42_RS25205at 996.992 kb on + strand, within RR42_RS25205at 996.992 kb on + strand, within RR42_RS25205at 996.992 kb on + strand, within RR42_RS25205at 996.992 kb on + strand, within RR42_RS25205at 996.993 kb on - strand, within RR42_RS25205at 996.993 kb on - strand, within RR42_RS25205at 996.993 kb on - strand, within RR42_RS25205at 997.026 kb on - strand, within RR42_RS25205at 997.050 kb on + strand, within RR42_RS25205at 997.050 kb on + strand, within RR42_RS25205at 997.091 kb on + strand, within RR42_RS25205at 997.105 kb on - strand, within RR42_RS25205at 997.105 kb on - strand, within RR42_RS25205at 997.111 kb on - strandat 997.179 kb on + strandat 997.205 kb on + strandat 997.206 kb on - strandat 997.322 kb on + strandat 997.323 kb on - strandat 997.408 kb on - strandat 997.519 kb on - strand, within RR42_RS25210at 997.519 kb on - strand, within RR42_RS25210at 997.688 kb on + strand, within RR42_RS25210at 997.792 kb on + strand, within RR42_RS25210at 997.793 kb on - strand, within RR42_RS25210at 997.793 kb on - strand, within RR42_RS25210at 997.793 kb on - strand, within RR42_RS25210at 997.835 kb on - strand, within RR42_RS25210at 997.860 kb on + strand, within RR42_RS25210at 997.861 kb on - strand, within RR42_RS25210at 997.861 kb on - strand, within RR42_RS25210at 997.864 kb on + strand, within RR42_RS25210at 997.864 kb on + strand, within RR42_RS25210at 997.865 kb on - strand, within RR42_RS25210at 997.888 kb on - strand, within RR42_RS25210at 997.928 kb on + strand, within RR42_RS25210at 997.928 kb on + strand, within RR42_RS25210at 997.929 kb on - strand, within RR42_RS25210at 997.929 kb on - strand, within RR42_RS25210at 997.929 kb on - strand, within RR42_RS25210at 997.931 kb on + strand, within RR42_RS25210at 997.932 kb on - strand, within RR42_RS25210at 997.932 kb on - strand, within RR42_RS25210at 997.932 kb on - strand, within RR42_RS25210at 997.998 kb on - strand, within RR42_RS25210

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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995,453 + -0.5
995,453 + +0.3
995,454 - +0.1
995,546 + +0.8
995,546 + -1.7
995,634 + RR42_RS25200 0.24 -1.4
995,634 + RR42_RS25200 0.24 +0.3
995,634 + RR42_RS25200 0.24 +0.1
995,635 - RR42_RS25200 0.25 +1.2
995,635 - RR42_RS25200 0.25 -0.6
995,636 + RR42_RS25200 0.25 -0.1
995,763 + RR42_RS25200 0.47 -0.3
995,764 - RR42_RS25200 0.47 -0.5
996,084 + -0.5
996,084 + -0.0
996,084 + -1.0
996,084 + -0.0
996,085 - -1.3
996,085 - +0.0
996,145 + -0.1
996,299 + -1.8
996,355 - -0.8
996,355 - -0.3
996,355 - -0.0
996,355 - +0.1
996,618 + RR42_RS25205 0.23 +0.1
996,619 - RR42_RS25205 0.23 +0.4
996,619 - RR42_RS25205 0.23 -0.5
996,709 + RR42_RS25205 0.36 +0.3
996,872 + RR42_RS25205 0.58 +0.5
996,900 + RR42_RS25205 0.62 +1.4
996,901 - RR42_RS25205 0.62 -1.5
996,901 - RR42_RS25205 0.62 -0.2
996,992 + RR42_RS25205 0.74 -0.7
996,992 + RR42_RS25205 0.74 +0.2
996,992 + RR42_RS25205 0.74 -0.2
996,992 + RR42_RS25205 0.74 +1.1
996,993 - RR42_RS25205 0.74 -0.4
996,993 - RR42_RS25205 0.74 -0.3
996,993 - RR42_RS25205 0.74 +0.4
997,026 - RR42_RS25205 0.79 +0.6
997,050 + RR42_RS25205 0.82 -0.8
997,050 + RR42_RS25205 0.82 +0.4
997,091 + RR42_RS25205 0.88 +0.7
997,105 - RR42_RS25205 0.90 +0.8
997,105 - RR42_RS25205 0.90 +0.5
997,111 - +1.9
997,179 + +0.2
997,205 + +0.5
997,206 - -0.1
997,322 + +0.6
997,323 - +0.2
997,408 - +0.1
997,519 - RR42_RS25210 0.14 -0.4
997,519 - RR42_RS25210 0.14 +0.0
997,688 + RR42_RS25210 0.28 -1.7
997,792 + RR42_RS25210 0.37 +0.4
997,793 - RR42_RS25210 0.37 +0.4
997,793 - RR42_RS25210 0.37 +0.0
997,793 - RR42_RS25210 0.37 +0.2
997,835 - RR42_RS25210 0.41 -0.1
997,860 + RR42_RS25210 0.43 -0.8
997,861 - RR42_RS25210 0.43 -0.4
997,861 - RR42_RS25210 0.43 -0.1
997,864 + RR42_RS25210 0.43 -0.8
997,864 + RR42_RS25210 0.43 -0.1
997,865 - RR42_RS25210 0.43 +0.2
997,888 - RR42_RS25210 0.45 +0.0
997,928 + RR42_RS25210 0.48 +0.4
997,928 + RR42_RS25210 0.48 +0.3
997,929 - RR42_RS25210 0.49 -0.1
997,929 - RR42_RS25210 0.49 +0.1
997,929 - RR42_RS25210 0.49 +0.1
997,931 + RR42_RS25210 0.49 -0.6
997,932 - RR42_RS25210 0.49 +1.9
997,932 - RR42_RS25210 0.49 -0.2
997,932 - RR42_RS25210 0.49 -0.6
997,998 - RR42_RS25210 0.54 +0.0

Or see this region's nucleotide sequence