Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04345 and RR42_RS04350 are separated by 243 nucleotides RR42_RS04350 and RR42_RS04355 are separated by 116 nucleotides
RR42_RS04345: RR42_RS04345 - iron ABC transporter permease, at 964,983 to 966,611
_RS04345
RR42_RS04350: RR42_RS04350 - ABC transporter ATP-binding protein, at 966,855 to 967,916
_RS04350
RR42_RS04355: RR42_RS04355 - recombination factor protein RarA, at 968,033 to 969,400
_RS04355
Position (kb) 966
967
968 Strain fitness (log2 ratio) -2
-1
0
1 at 965.947 kb on + strand, within RR42_RS04345 at 965.980 kb on + strand, within RR42_RS04345 at 966.169 kb on + strand, within RR42_RS04345 at 966.169 kb on + strand, within RR42_RS04345 at 966.308 kb on + strand, within RR42_RS04345 at 966.311 kb on - strand, within RR42_RS04345 at 966.329 kb on - strand, within RR42_RS04345 at 966.329 kb on - strand, within RR42_RS04345 at 966.391 kb on + strand, within RR42_RS04345 at 966.391 kb on + strand, within RR42_RS04345 at 966.467 kb on + strand at 966.467 kb on + strand at 966.467 kb on + strand at 966.468 kb on - strand at 966.478 kb on + strand at 966.479 kb on - strand at 966.657 kb on + strand at 966.657 kb on + strand at 966.658 kb on - strand at 966.713 kb on - strand at 966.751 kb on - strand at 966.762 kb on + strand at 966.812 kb on + strand at 966.812 kb on + strand at 966.812 kb on + strand at 966.812 kb on + strand at 966.812 kb on + strand at 966.813 kb on - strand at 966.813 kb on - strand at 966.814 kb on + strand at 966.814 kb on + strand at 966.814 kb on + strand at 966.815 kb on - strand at 966.815 kb on - strand at 967.132 kb on - strand, within RR42_RS04350 at 967.132 kb on - strand, within RR42_RS04350 at 967.532 kb on + strand, within RR42_RS04350 at 967.532 kb on + strand, within RR42_RS04350 at 967.539 kb on + strand, within RR42_RS04350 at 967.649 kb on + strand, within RR42_RS04350 at 967.649 kb on + strand, within RR42_RS04350 at 967.650 kb on - strand, within RR42_RS04350 at 967.650 kb on - strand, within RR42_RS04350 at 967.789 kb on - strand, within RR42_RS04350 at 967.949 kb on + strand at 967.949 kb on + strand at 967.950 kb on - strand at 967.950 kb on - strand at 967.950 kb on - strand at 968.005 kb on + strand at 968.006 kb on - strand at 968.017 kb on + strand at 968.325 kb on - strand, within RR42_RS04355 at 968.502 kb on - strand, within RR42_RS04355 at 968.502 kb on - strand, within RR42_RS04355 at 968.765 kb on + strand, within RR42_RS04355 at 968.765 kb on + strand, within RR42_RS04355 at 968.825 kb on + strand, within RR42_RS04355 at 968.825 kb on + strand, within RR42_RS04355 at 968.826 kb on - strand, within RR42_RS04355
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 965,947 + RR42_RS04345 0.59 +0.1 965,980 + RR42_RS04345 0.61 +1.3 966,169 + RR42_RS04345 0.73 +0.9 966,169 + RR42_RS04345 0.73 -0.6 966,308 + RR42_RS04345 0.81 -0.2 966,311 - RR42_RS04345 0.82 -0.1 966,329 - RR42_RS04345 0.83 -1.1 966,329 - RR42_RS04345 0.83 +0.4 966,391 + RR42_RS04345 0.86 +0.9 966,391 + RR42_RS04345 0.86 +0.2 966,467 + -0.2 966,467 + -0.2 966,467 + -0.2 966,468 - -0.3 966,478 + -0.8 966,479 - -0.2 966,657 + -0.6 966,657 + +0.0 966,658 - -0.0 966,713 - +0.7 966,751 - +0.1 966,762 + +0.1 966,812 + +0.7 966,812 + -0.4 966,812 + +0.6 966,812 + +0.3 966,812 + +0.6 966,813 - +0.4 966,813 - +0.1 966,814 + +0.1 966,814 + -0.9 966,814 + -0.2 966,815 - +0.3 966,815 - -0.3 967,132 - RR42_RS04350 0.26 -0.4 967,132 - RR42_RS04350 0.26 -2.2 967,532 + RR42_RS04350 0.64 -0.6 967,532 + RR42_RS04350 0.64 -1.4 967,539 + RR42_RS04350 0.64 +0.8 967,649 + RR42_RS04350 0.75 +0.7 967,649 + RR42_RS04350 0.75 -0.5 967,650 - RR42_RS04350 0.75 -1.0 967,650 - RR42_RS04350 0.75 -1.2 967,789 - RR42_RS04350 0.88 +0.0 967,949 + -0.9 967,949 + -0.0 967,950 - +0.2 967,950 - +0.8 967,950 - +0.7 968,005 + +0.2 968,006 - -0.5 968,017 + -0.3 968,325 - RR42_RS04355 0.21 -0.9 968,502 - RR42_RS04355 0.34 -0.4 968,502 - RR42_RS04355 0.34 -0.3 968,765 + RR42_RS04355 0.54 -0.8 968,765 + RR42_RS04355 0.54 -0.9 968,825 + RR42_RS04355 0.58 +0.7 968,825 + RR42_RS04355 0.58 -0.4 968,826 - RR42_RS04355 0.58 -0.2
Or see this region's nucleotide sequence