Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03445 and RR42_RS03450 are separated by 360 nucleotides RR42_RS03450 and RR42_RS03455 are separated by 12 nucleotides RR42_RS03455 and RR42_RS03460 overlap by 20 nucleotides
RR42_RS03445: RR42_RS03445 - adenylate kinase, at 765,767 to 766,432
_RS03445
RR42_RS03450: RR42_RS03450 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 766,793 to 767,602
_RS03450
RR42_RS03455: RR42_RS03455 - hypothetical protein, at 767,615 to 767,803
_RS03455
RR42_RS03460: RR42_RS03460 - tetraacyldisaccharide 4'-kinase, at 767,784 to 768,893
_RS03460
Position (kb) 766
767
768 Strain fitness (log2 ratio) -1
0
1 at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.671 kb on - strand at 766.671 kb on - strand at 766.671 kb on - strand at 766.684 kb on - strand at 766.739 kb on + strand at 766.739 kb on + strand at 766.739 kb on + strand at 766.739 kb on + strand at 766.740 kb on - strand at 766.740 kb on - strand at 766.747 kb on - strand at 766.747 kb on - strand at 766.753 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 766,461 - -1.5 766,461 - -0.0 766,461 - +0.4 766,461 - +0.5 766,461 - -0.3 766,461 - +1.6 766,461 - -0.5 766,461 - -0.0 766,671 - +0.2 766,671 - -0.8 766,671 - -0.2 766,684 - +0.1 766,739 + +1.2 766,739 + -0.4 766,739 + +1.0 766,739 + +0.1 766,740 - +0.1 766,740 - -0.9 766,747 - +0.5 766,747 - -0.1 766,753 + -0.4
Or see this region's nucleotide sequence