Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02880

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02875 and RR42_RS02880 are separated by 30 nucleotidesRR42_RS02880 and RR42_RS02885 are separated by 661 nucleotides RR42_RS02875: RR42_RS02875 - serine/threonine protein kinase, at 641,860 to 642,921 _RS02875 RR42_RS02880: RR42_RS02880 - universal stress protein UspA, at 642,952 to 643,389 _RS02880 RR42_RS02885: RR42_RS02885 - acetylornithine deacetylase, at 644,051 to 645,613 _RS02885 Position (kb) 642 643 644Strain fitness (log2 ratio) -1 0 1 2at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.016 kb on - strand, within RR42_RS02875at 642.016 kb on - strand, within RR42_RS02875at 642.016 kb on - strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.020 kb on - strand, within RR42_RS02875at 642.020 kb on - strand, within RR42_RS02875at 642.079 kb on + strand, within RR42_RS02875at 642.271 kb on - strand, within RR42_RS02875at 642.331 kb on + strand, within RR42_RS02875at 642.405 kb on + strand, within RR42_RS02875at 642.405 kb on + strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.604 kb on - strand, within RR42_RS02875at 642.697 kb on + strand, within RR42_RS02875at 642.698 kb on - strand, within RR42_RS02875at 642.953 kb on + strandat 642.954 kb on - strandat 642.982 kb on + strandat 643.100 kb on + strand, within RR42_RS02880at 643.101 kb on - strand, within RR42_RS02880at 643.252 kb on + strand, within RR42_RS02880at 643.252 kb on + strand, within RR42_RS02880at 643.252 kb on + strand, within RR42_RS02880at 643.253 kb on - strand, within RR42_RS02880at 643.253 kb on - strand, within RR42_RS02880at 643.253 kb on - strand, within RR42_RS02880at 643.405 kb on + strandat 643.405 kb on + strandat 643.406 kb on - strandat 643.466 kb on + strandat 643.466 kb on + strandat 643.467 kb on - strandat 643.633 kb on + strandat 643.634 kb on - strandat 643.634 kb on - strandat 643.644 kb on + strandat 643.653 kb on + strandat 643.688 kb on + strandat 643.688 kb on + strandat 643.688 kb on + strandat 643.688 kb on + strandat 643.689 kb on - strandat 643.689 kb on - strandat 643.871 kb on - strandat 643.971 kb on + strandat 643.971 kb on + strandat 643.972 kb on - strandat 644.023 kb on + strandat 644.024 kb on - strandat 644.145 kb on + strandat 644.146 kb on - strandat 644.181 kb on - strandat 644.327 kb on + strand, within RR42_RS02885at 644.328 kb on - strand, within RR42_RS02885at 644.328 kb on - strand, within RR42_RS02885at 644.328 kb on - strand, within RR42_RS02885at 644.328 kb on - strand, within RR42_RS02885at 644.387 kb on + strand, within RR42_RS02885at 644.387 kb on + strand, within RR42_RS02885at 644.388 kb on - strand, within RR42_RS02885

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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642,015 + RR42_RS02875 0.15 +0.3
642,015 + RR42_RS02875 0.15 +0.7
642,015 + RR42_RS02875 0.15 +1.3
642,015 + RR42_RS02875 0.15 +0.4
642,015 + RR42_RS02875 0.15 +0.1
642,015 + RR42_RS02875 0.15 +0.2
642,015 + RR42_RS02875 0.15 +0.4
642,016 - RR42_RS02875 0.15 +0.5
642,016 - RR42_RS02875 0.15 -0.0
642,016 - RR42_RS02875 0.15 -0.1
642,019 + RR42_RS02875 0.15 +0.4
642,019 + RR42_RS02875 0.15 +0.2
642,019 + RR42_RS02875 0.15 +0.4
642,019 + RR42_RS02875 0.15 +0.5
642,019 + RR42_RS02875 0.15 +0.0
642,019 + RR42_RS02875 0.15 +2.2
642,020 - RR42_RS02875 0.15 -1.3
642,020 - RR42_RS02875 0.15 +1.4
642,079 + RR42_RS02875 0.21 +0.4
642,271 - RR42_RS02875 0.39 +1.3
642,331 + RR42_RS02875 0.44 +0.8
642,405 + RR42_RS02875 0.51 -0.4
642,405 + RR42_RS02875 0.51 -0.7
642,406 - RR42_RS02875 0.51 -0.4
642,406 - RR42_RS02875 0.51 +0.9
642,406 - RR42_RS02875 0.51 +0.0
642,406 - RR42_RS02875 0.51 +0.1
642,406 - RR42_RS02875 0.51 -0.7
642,604 - RR42_RS02875 0.70 +0.4
642,697 + RR42_RS02875 0.79 +0.3
642,698 - RR42_RS02875 0.79 +0.5
642,953 + +1.0
642,954 - +0.3
642,982 + +2.4
643,100 + RR42_RS02880 0.34 -0.4
643,101 - RR42_RS02880 0.34 +2.0
643,252 + RR42_RS02880 0.68 +0.8
643,252 + RR42_RS02880 0.68 +0.2
643,252 + RR42_RS02880 0.68 -0.9
643,253 - RR42_RS02880 0.69 +0.6
643,253 - RR42_RS02880 0.69 -0.7
643,253 - RR42_RS02880 0.69 +0.4
643,405 + +0.4
643,405 + +0.1
643,406 - +0.8
643,466 + +1.9
643,466 + -1.0
643,467 - +1.6
643,633 + +0.8
643,634 - +0.5
643,634 - +0.9
643,644 + +0.5
643,653 + -0.0
643,688 + -0.6
643,688 + -0.2
643,688 + +0.2
643,688 + +0.5
643,689 - +0.9
643,689 - +0.0
643,871 - -0.9
643,971 + -0.5
643,971 + -0.6
643,972 - +0.3
644,023 + +0.2
644,024 - -0.6
644,145 + -0.2
644,146 - +0.9
644,181 - +1.1
644,327 + RR42_RS02885 0.18 +0.1
644,328 - RR42_RS02885 0.18 +0.5
644,328 - RR42_RS02885 0.18 +0.0
644,328 - RR42_RS02885 0.18 +0.8
644,328 - RR42_RS02885 0.18 +0.3
644,387 + RR42_RS02885 0.21 +1.5
644,387 + RR42_RS02885 0.21 +0.1
644,388 - RR42_RS02885 0.22 -0.6

Or see this region's nucleotide sequence