Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02295

Experiment: R2A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS02290 and RR42_RS02295 overlap by 4 nucleotidesRR42_RS02295 and RR42_RS02300 are separated by 123 nucleotides RR42_RS02290: RR42_RS02290 - multidrug ABC transporter ATP-binding protein, at 513,044 to 514,057 _RS02290 RR42_RS02295: RR42_RS02295 - secretion protein HlyD, at 514,054 to 515,007 _RS02295 RR42_RS02300: RR42_RS02300 - hypothetical protein, at 515,131 to 515,802 _RS02300 Position (kb) 514 515 516Strain fitness (log2 ratio) -1 0 1 2at 513.232 kb on + strand, within RR42_RS02290at 513.394 kb on - strand, within RR42_RS02290at 513.401 kb on - strand, within RR42_RS02290at 513.402 kb on + strand, within RR42_RS02290at 513.403 kb on - strand, within RR42_RS02290at 513.439 kb on - strand, within RR42_RS02290at 513.439 kb on - strand, within RR42_RS02290at 513.699 kb on + strand, within RR42_RS02290at 513.700 kb on - strand, within RR42_RS02290at 513.771 kb on + strand, within RR42_RS02290at 513.771 kb on + strand, within RR42_RS02290at 513.772 kb on - strand, within RR42_RS02290at 513.973 kb on - strandat 514.163 kb on + strand, within RR42_RS02295at 514.164 kb on - strand, within RR42_RS02295at 514.164 kb on - strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.298 kb on + strand, within RR42_RS02295at 514.298 kb on + strand, within RR42_RS02295at 514.298 kb on + strand, within RR42_RS02295at 514.299 kb on - strand, within RR42_RS02295at 514.299 kb on - strand, within RR42_RS02295at 514.299 kb on - strand, within RR42_RS02295at 514.388 kb on + strand, within RR42_RS02295at 514.389 kb on - strand, within RR42_RS02295at 514.389 kb on - strand, within RR42_RS02295at 514.429 kb on + strand, within RR42_RS02295at 514.622 kb on + strand, within RR42_RS02295at 514.919 kb on + strandat 514.919 kb on + strandat 514.919 kb on + strandat 514.919 kb on + strandat 514.920 kb on - strandat 514.960 kb on + strandat 514.960 kb on + strandat 514.961 kb on - strandat 514.961 kb on - strandat 514.961 kb on - strandat 514.961 kb on - strandat 515.232 kb on + strand, within RR42_RS02300at 515.232 kb on + strand, within RR42_RS02300at 515.232 kb on + strand, within RR42_RS02300at 515.232 kb on + strand, within RR42_RS02300at 515.233 kb on - strand, within RR42_RS02300at 515.233 kb on - strand, within RR42_RS02300at 515.233 kb on - strand, within RR42_RS02300at 515.233 kb on - strand, within RR42_RS02300at 515.241 kb on + strand, within RR42_RS02300at 515.606 kb on + strand, within RR42_RS02300at 515.607 kb on - strand, within RR42_RS02300at 515.607 kb on - strand, within RR42_RS02300at 515.609 kb on + strand, within RR42_RS02300at 515.609 kb on + strand, within RR42_RS02300at 515.609 kb on + strand, within RR42_RS02300at 515.610 kb on - strand, within RR42_RS02300at 515.610 kb on - strand, within RR42_RS02300at 515.824 kb on + strandat 515.843 kb on - strandat 515.897 kb on - strandat 515.922 kb on + strandat 515.923 kb on - strandat 515.923 kb on - strandat 515.933 kb on + strandat 515.933 kb on + strandat 515.933 kb on + strandat 515.934 kb on - strandat 515.934 kb on - strandat 515.945 kb on + strandat 515.946 kb on - strandat 515.946 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A
remove
513,232 + RR42_RS02290 0.19 -0.2
513,394 - RR42_RS02290 0.35 +1.0
513,401 - RR42_RS02290 0.35 -0.4
513,402 + RR42_RS02290 0.35 -0.7
513,403 - RR42_RS02290 0.35 +1.2
513,439 - RR42_RS02290 0.39 +1.1
513,439 - RR42_RS02290 0.39 -1.0
513,699 + RR42_RS02290 0.65 +0.5
513,700 - RR42_RS02290 0.65 +0.3
513,771 + RR42_RS02290 0.72 +1.4
513,771 + RR42_RS02290 0.72 +0.5
513,772 - RR42_RS02290 0.72 +0.2
513,973 - +0.3
514,163 + RR42_RS02295 0.11 +0.6
514,164 - RR42_RS02295 0.12 +0.9
514,164 - RR42_RS02295 0.12 +1.9
514,202 + RR42_RS02295 0.16 +0.5
514,202 + RR42_RS02295 0.16 -0.8
514,202 + RR42_RS02295 0.16 +0.0
514,202 + RR42_RS02295 0.16 +0.1
514,202 + RR42_RS02295 0.16 +0.9
514,203 - RR42_RS02295 0.16 +0.3
514,203 - RR42_RS02295 0.16 -0.1
514,203 - RR42_RS02295 0.16 -0.5
514,203 - RR42_RS02295 0.16 +1.1
514,203 - RR42_RS02295 0.16 -0.5
514,298 + RR42_RS02295 0.26 -0.0
514,298 + RR42_RS02295 0.26 +0.5
514,298 + RR42_RS02295 0.26 +1.4
514,299 - RR42_RS02295 0.26 +1.4
514,299 - RR42_RS02295 0.26 +0.2
514,299 - RR42_RS02295 0.26 +0.6
514,388 + RR42_RS02295 0.35 +1.4
514,389 - RR42_RS02295 0.35 -0.9
514,389 - RR42_RS02295 0.35 -0.4
514,429 + RR42_RS02295 0.39 +1.6
514,622 + RR42_RS02295 0.60 +1.3
514,919 + +0.5
514,919 + -0.2
514,919 + -0.2
514,919 + +0.4
514,920 - +1.1
514,960 + -0.2
514,960 + -0.0
514,961 - +0.4
514,961 - +0.5
514,961 - -0.1
514,961 - +0.3
515,232 + RR42_RS02300 0.15 +0.0
515,232 + RR42_RS02300 0.15 +0.3
515,232 + RR42_RS02300 0.15 +0.4
515,232 + RR42_RS02300 0.15 +1.7
515,233 - RR42_RS02300 0.15 -0.3
515,233 - RR42_RS02300 0.15 -1.2
515,233 - RR42_RS02300 0.15 +0.7
515,233 - RR42_RS02300 0.15 +1.1
515,241 + RR42_RS02300 0.16 +0.4
515,606 + RR42_RS02300 0.71 +0.7
515,607 - RR42_RS02300 0.71 +0.7
515,607 - RR42_RS02300 0.71 +0.1
515,609 + RR42_RS02300 0.71 -0.0
515,609 + RR42_RS02300 0.71 -0.1
515,609 + RR42_RS02300 0.71 +0.4
515,610 - RR42_RS02300 0.71 -1.0
515,610 - RR42_RS02300 0.71 -0.1
515,824 + +1.0
515,843 - +0.3
515,897 - -0.2
515,922 + -0.7
515,923 - -0.0
515,923 - +0.0
515,933 + -1.0
515,933 + -0.3
515,933 + -0.3
515,934 - -0.1
515,934 - +2.1
515,945 + +0.1
515,946 - +0.1
515,946 - +0.5

Or see this region's nucleotide sequence