Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01895 and RR42_RS01900 are separated by 175 nucleotides RR42_RS01900 and RR42_RS01905 are separated by 78 nucleotides RR42_RS01905 and RR42_RS01910 are separated by 109 nucleotides RR42_RS01910 and RR42_RS01915 are separated by 7 nucleotides
RR42_RS01895: RR42_RS01895 - MFS transporter, at 426,763 to 427,623
_RS01895
RR42_RS01900: RR42_RS01900 - membrane protein, at 427,799 to 428,008
_RS01900
RR42_RS01905: RR42_RS01905 - cytochrome C oxidase subunit II, at 428,087 to 428,848
_RS01905
RR42_RS01910: RR42_RS01910 - cytochrome C oxidase subunit I, at 428,958 to 429,614
_RS01910
RR42_RS01915: RR42_RS01915 - cytochrome C oxidase subunit I, at 429,622 to 430,725
_RS01915
Position (kb) 428
429 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.154 kb on + strand, within RR42_RS01895 at 427.299 kb on + strand, within RR42_RS01895 at 427.366 kb on + strand, within RR42_RS01895 at 427.366 kb on + strand, within RR42_RS01895 at 427.420 kb on + strand, within RR42_RS01895 at 427.421 kb on - strand, within RR42_RS01895 at 427.423 kb on - strand, within RR42_RS01895 at 427.564 kb on + strand at 427.601 kb on - strand at 427.621 kb on + strand at 427.622 kb on - strand at 427.622 kb on - strand at 427.723 kb on + strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.830 kb on - strand, within RR42_RS01900 at 427.830 kb on - strand, within RR42_RS01900 at 427.830 kb on - strand, within RR42_RS01900 at 427.966 kb on + strand, within RR42_RS01900 at 427.966 kb on + strand, within RR42_RS01900 at 428.036 kb on - strand at 428.041 kb on + strand at 428.041 kb on + strand at 428.042 kb on - strand at 428.042 kb on - strand at 428.338 kb on + strand, within RR42_RS01905 at 428.339 kb on - strand, within RR42_RS01905 at 428.498 kb on - strand, within RR42_RS01905 at 428.640 kb on - strand, within RR42_RS01905 at 428.640 kb on - strand, within RR42_RS01905 at 428.753 kb on + strand, within RR42_RS01905 at 428.754 kb on - strand, within RR42_RS01905 at 428.760 kb on - strand, within RR42_RS01905 at 428.957 kb on + strand at 428.957 kb on + strand at 428.957 kb on + strand at 428.957 kb on + strand at 428.958 kb on - strand at 428.958 kb on - strand at 428.958 kb on - strand at 428.958 kb on - strand at 429.096 kb on + strand, within RR42_RS01910 at 429.105 kb on + strand, within RR42_RS01910 at 429.105 kb on + strand, within RR42_RS01910 at 429.105 kb on + strand, within RR42_RS01910 at 429.106 kb on - strand, within RR42_RS01910 at 429.108 kb on + strand, within RR42_RS01910 at 429.108 kb on + strand, within RR42_RS01910 at 429.108 kb on + strand, within RR42_RS01910 at 429.109 kb on - strand, within RR42_RS01910 at 429.109 kb on - strand, within RR42_RS01910 at 429.109 kb on - strand, within RR42_RS01910 at 429.141 kb on + strand, within RR42_RS01910 at 429.141 kb on + strand, within RR42_RS01910 at 429.142 kb on - strand, within RR42_RS01910 at 429.142 kb on - strand, within RR42_RS01910 at 429.154 kb on - strand, within RR42_RS01910 at 429.403 kb on - strand, within RR42_RS01910 at 429.597 kb on + strand at 429.598 kb on - strand at 429.676 kb on + strand at 429.677 kb on - strand at 429.677 kb on - strand at 429.677 kb on - strand at 429.677 kb on - strand at 429.677 kb on - strand at 429.677 kb on - strand at 429.818 kb on - strand, within RR42_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 427,154 + RR42_RS01895 0.45 +1.2 427,299 + RR42_RS01895 0.62 -0.7 427,366 + RR42_RS01895 0.70 -0.0 427,366 + RR42_RS01895 0.70 -2.0 427,420 + RR42_RS01895 0.76 +1.4 427,421 - RR42_RS01895 0.76 -1.1 427,423 - RR42_RS01895 0.77 -0.1 427,564 + -0.8 427,601 - -0.2 427,621 + +0.1 427,622 - -0.6 427,622 - -0.9 427,723 + +0.3 427,724 - -1.0 427,724 - +0.3 427,724 - -0.5 427,724 - +1.6 427,724 - -0.6 427,830 - RR42_RS01900 0.15 -0.7 427,830 - RR42_RS01900 0.15 -1.1 427,830 - RR42_RS01900 0.15 -0.8 427,966 + RR42_RS01900 0.80 +0.2 427,966 + RR42_RS01900 0.80 -0.1 428,036 - +0.6 428,041 + -1.9 428,041 + -0.0 428,042 - +2.2 428,042 - -0.6 428,338 + RR42_RS01905 0.33 -1.4 428,339 - RR42_RS01905 0.33 -0.6 428,498 - RR42_RS01905 0.54 -1.8 428,640 - RR42_RS01905 0.73 +0.1 428,640 - RR42_RS01905 0.73 -1.0 428,753 + RR42_RS01905 0.87 -0.8 428,754 - RR42_RS01905 0.88 -1.4 428,760 - RR42_RS01905 0.88 -0.8 428,957 + +0.9 428,957 + -0.2 428,957 + -1.1 428,957 + +0.5 428,958 - -0.9 428,958 - -0.5 428,958 - +0.2 428,958 - +1.9 429,096 + RR42_RS01910 0.21 -1.1 429,105 + RR42_RS01910 0.22 -1.5 429,105 + RR42_RS01910 0.22 -0.6 429,105 + RR42_RS01910 0.22 -0.2 429,106 - RR42_RS01910 0.23 -0.5 429,108 + RR42_RS01910 0.23 -0.0 429,108 + RR42_RS01910 0.23 -1.4 429,108 + RR42_RS01910 0.23 +0.0 429,109 - RR42_RS01910 0.23 -0.2 429,109 - RR42_RS01910 0.23 -1.6 429,109 - RR42_RS01910 0.23 +0.9 429,141 + RR42_RS01910 0.28 -1.2 429,141 + RR42_RS01910 0.28 -0.7 429,142 - RR42_RS01910 0.28 -0.7 429,142 - RR42_RS01910 0.28 +0.7 429,154 - RR42_RS01910 0.30 -1.5 429,403 - RR42_RS01910 0.68 -1.0 429,597 + -2.3 429,598 - -1.3 429,676 + -0.7 429,677 - -2.5 429,677 - -0.6 429,677 - -0.8 429,677 - -0.7 429,677 - -0.7 429,677 - -1.7 429,818 - RR42_RS01915 0.18 -0.4
Or see this region's nucleotide sequence