Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00190

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00190 and RR42_RS00195 are separated by 131 nucleotides RR42_RS00190: RR42_RS00190 - ABC transporter substrate-binding protein, at 62,998 to 64,179 _RS00190 RR42_RS00195: RR42_RS00195 - ABC transporter permease, at 64,311 to 65,240 _RS00195 Position (kb) 62 63 64 65Strain fitness (log2 ratio) -2 -1 0 1at 62.033 kb on + strandat 62.033 kb on + strandat 62.033 kb on + strandat 62.038 kb on - strandat 62.038 kb on - strandat 62.130 kb on + strandat 62.188 kb on - strandat 62.261 kb on + strandat 62.268 kb on - strandat 62.268 kb on - strandat 62.425 kb on + strandat 62.451 kb on + strandat 62.451 kb on + strandat 62.451 kb on + strandat 62.451 kb on + strandat 62.451 kb on + strandat 62.453 kb on + strandat 62.675 kb on + strandat 62.675 kb on + strandat 62.676 kb on - strandat 62.718 kb on + strandat 62.755 kb on + strandat 62.755 kb on + strandat 62.755 kb on + strandat 62.756 kb on - strandat 62.816 kb on - strandat 62.816 kb on - strandat 62.816 kb on - strandat 62.816 kb on - strandat 62.969 kb on - strandat 63.023 kb on + strandat 63.023 kb on + strandat 63.023 kb on + strandat 63.024 kb on - strandat 63.024 kb on - strandat 63.024 kb on - strandat 63.024 kb on - strandat 63.212 kb on - strand, within RR42_RS00190at 63.212 kb on - strand, within RR42_RS00190at 63.212 kb on - strand, within RR42_RS00190at 63.212 kb on - strand, within RR42_RS00190at 63.217 kb on + strand, within RR42_RS00190at 63.217 kb on + strand, within RR42_RS00190at 63.217 kb on + strand, within RR42_RS00190at 63.218 kb on - strand, within RR42_RS00190at 63.218 kb on - strand, within RR42_RS00190at 63.218 kb on - strand, within RR42_RS00190at 63.218 kb on - strand, within RR42_RS00190at 63.252 kb on + strand, within RR42_RS00190at 63.412 kb on + strand, within RR42_RS00190at 63.413 kb on - strand, within RR42_RS00190at 63.420 kb on + strand, within RR42_RS00190at 63.421 kb on - strand, within RR42_RS00190at 63.421 kb on - strand, within RR42_RS00190at 63.421 kb on - strand, within RR42_RS00190at 63.503 kb on - strand, within RR42_RS00190at 63.553 kb on - strand, within RR42_RS00190at 63.559 kb on + strand, within RR42_RS00190at 63.682 kb on + strand, within RR42_RS00190at 63.683 kb on - strand, within RR42_RS00190at 63.787 kb on + strand, within RR42_RS00190at 63.787 kb on + strand, within RR42_RS00190at 63.787 kb on + strand, within RR42_RS00190at 63.788 kb on - strand, within RR42_RS00190at 63.788 kb on - strand, within RR42_RS00190at 63.835 kb on - strand, within RR42_RS00190at 63.889 kb on + strand, within RR42_RS00190at 63.889 kb on + strand, within RR42_RS00190at 63.890 kb on - strand, within RR42_RS00190at 63.925 kb on + strand, within RR42_RS00190at 63.925 kb on + strand, within RR42_RS00190at 64.099 kb on + strandat 64.099 kb on + strandat 64.099 kb on + strandat 64.099 kb on + strandat 64.100 kb on - strandat 64.100 kb on - strandat 64.100 kb on - strandat 64.100 kb on - strandat 64.144 kb on + strandat 64.178 kb on - strandat 64.329 kb on + strandat 64.330 kb on - strandat 64.363 kb on - strandat 64.385 kb on + strandat 64.385 kb on + strandat 64.472 kb on + strand, within RR42_RS00195at 64.616 kb on + strand, within RR42_RS00195at 64.616 kb on + strand, within RR42_RS00195at 64.617 kb on - strand, within RR42_RS00195at 64.823 kb on + strand, within RR42_RS00195at 64.972 kb on - strand, within RR42_RS00195at 65.149 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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62,033 + +0.5
62,033 + -1.2
62,033 + -0.5
62,038 - +0.2
62,038 - +0.1
62,130 + +0.0
62,188 - +0.1
62,261 + -0.9
62,268 - -0.1
62,268 - +0.1
62,425 + -0.3
62,451 + -0.1
62,451 + -0.8
62,451 + +0.4
62,451 + -1.4
62,451 + -0.6
62,453 + +0.2
62,675 + +0.6
62,675 + +0.4
62,676 - +0.7
62,718 + -0.9
62,755 + +0.2
62,755 + -0.8
62,755 + -1.4
62,756 - -0.3
62,816 - -0.0
62,816 - -0.7
62,816 - +0.6
62,816 - -0.2
62,969 - +0.3
63,023 + +0.8
63,023 + -0.1
63,023 + -0.6
63,024 - -1.0
63,024 - -0.3
63,024 - +1.0
63,024 - +0.1
63,212 - RR42_RS00190 0.18 +0.5
63,212 - RR42_RS00190 0.18 -0.5
63,212 - RR42_RS00190 0.18 +0.1
63,212 - RR42_RS00190 0.18 +0.3
63,217 + RR42_RS00190 0.19 -0.4
63,217 + RR42_RS00190 0.19 +0.2
63,217 + RR42_RS00190 0.19 +0.0
63,218 - RR42_RS00190 0.19 -0.6
63,218 - RR42_RS00190 0.19 -0.5
63,218 - RR42_RS00190 0.19 +0.1
63,218 - RR42_RS00190 0.19 +0.1
63,252 + RR42_RS00190 0.21 +0.3
63,412 + RR42_RS00190 0.35 +0.4
63,413 - RR42_RS00190 0.35 +0.3
63,420 + RR42_RS00190 0.36 +0.3
63,421 - RR42_RS00190 0.36 -0.2
63,421 - RR42_RS00190 0.36 -1.8
63,421 - RR42_RS00190 0.36 +0.6
63,503 - RR42_RS00190 0.43 +0.2
63,553 - RR42_RS00190 0.47 -0.1
63,559 + RR42_RS00190 0.47 +0.9
63,682 + RR42_RS00190 0.58 +1.5
63,683 - RR42_RS00190 0.58 +0.6
63,787 + RR42_RS00190 0.67 -0.0
63,787 + RR42_RS00190 0.67 -1.5
63,787 + RR42_RS00190 0.67 -0.3
63,788 - RR42_RS00190 0.67 +0.1
63,788 - RR42_RS00190 0.67 -0.3
63,835 - RR42_RS00190 0.71 +0.8
63,889 + RR42_RS00190 0.75 -0.2
63,889 + RR42_RS00190 0.75 +1.2
63,890 - RR42_RS00190 0.75 -0.8
63,925 + RR42_RS00190 0.78 -0.1
63,925 + RR42_RS00190 0.78 -0.0
64,099 + -0.1
64,099 + +0.5
64,099 + -0.7
64,099 + -1.4
64,100 - +0.0
64,100 - -1.5
64,100 - -0.3
64,100 - -0.0
64,144 + -0.5
64,178 - -1.1
64,329 + -0.5
64,330 - -0.7
64,363 - +0.2
64,385 + -0.3
64,385 + -0.9
64,472 + RR42_RS00195 0.17 +0.1
64,616 + RR42_RS00195 0.33 -0.4
64,616 + RR42_RS00195 0.33 -1.5
64,617 - RR42_RS00195 0.33 -1.2
64,823 + RR42_RS00195 0.55 -0.7
64,972 - RR42_RS00195 0.71 +0.1
65,149 - -0.4

Or see this region's nucleotide sequence