Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4609

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4606 and Pf1N1B4_4607 are separated by 22 nucleotidesPf1N1B4_4607 and Pf1N1B4_4608 overlap by 25 nucleotidesPf1N1B4_4608 and Pf1N1B4_4609 overlap by 1 nucleotidesPf1N1B4_4609 and Pf1N1B4_4610 overlap by 31 nucleotidesPf1N1B4_4610 and Pf1N1B4_4611 overlap by 4 nucleotides Pf1N1B4_4606 - NAD kinase (EC 2.7.1.23), at 5,079,044 to 5,079,364 _4606 Pf1N1B4_4607 - NAD kinase (EC 2.7.1.23), at 5,079,387 to 5,079,728 _4607 Pf1N1B4_4608 - NAD kinase (EC 2.7.1.23), at 5,079,704 to 5,079,934 _4608 Pf1N1B4_4609 - Diadenosine tetraphosphatase and related serine/threonine protein phosphatases, at 5,079,934 to 5,080,398 _4609 Pf1N1B4_4610 - Diadenosine tetraphosphatase and related serine/threonine protein phosphatases, at 5,080,368 to 5,080,904 _4610 Pf1N1B4_4611 - GlpG protein (membrane protein of glp regulon), at 5,080,901 to 5,081,773 _4611 Position (kb) 5079 5080 5081Strain fitness (log2 ratio) -2 -1 0 1at 5079.951 kb on + strandat 5079.956 kb on - strandat 5080.243 kb on - strand, within Pf1N1B4_4609at 5080.329 kb on + strand, within Pf1N1B4_4609at 5080.701 kb on + strand, within Pf1N1B4_4610at 5080.737 kb on + strand, within Pf1N1B4_4610at 5080.859 kb on + strandat 5080.920 kb on + strandat 5080.920 kb on + strandat 5080.920 kb on + strandat 5080.920 kb on + strandat 5080.921 kb on - strandat 5081.019 kb on + strand, within Pf1N1B4_4611at 5081.136 kb on + strand, within Pf1N1B4_4611

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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5,079,951 + -0.5
5,079,956 - -1.0
5,080,243 - Pf1N1B4_4609 0.66 -1.1
5,080,329 + Pf1N1B4_4609 0.85 -1.8
5,080,701 + Pf1N1B4_4610 0.62 -1.5
5,080,737 + Pf1N1B4_4610 0.69 -0.5
5,080,859 + -1.2
5,080,920 + +0.1
5,080,920 + -0.5
5,080,920 + -0.8
5,080,920 + -0.9
5,080,921 - -2.3
5,081,019 + Pf1N1B4_4611 0.14 +1.1
5,081,136 + Pf1N1B4_4611 0.27 +0.1

Or see this region's nucleotide sequence