Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4606

Experiment: L-Glutamic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_4605 and Pf1N1B4_4606 are separated by 125 nucleotidesPf1N1B4_4606 and Pf1N1B4_4607 are separated by 22 nucleotidesPf1N1B4_4607 and Pf1N1B4_4608 overlap by 25 nucleotidesPf1N1B4_4608 and Pf1N1B4_4609 overlap by 1 nucleotides Pf1N1B4_4605 - FIG00953564: hypothetical protein, at 5,077,968 to 5,078,918 _4605 Pf1N1B4_4606 - NAD kinase (EC 2.7.1.23), at 5,079,044 to 5,079,364 _4606 Pf1N1B4_4607 - NAD kinase (EC 2.7.1.23), at 5,079,387 to 5,079,728 _4607 Pf1N1B4_4608 - NAD kinase (EC 2.7.1.23), at 5,079,704 to 5,079,934 _4608 Pf1N1B4_4609 - Diadenosine tetraphosphatase and related serine/threonine protein phosphatases, at 5,079,934 to 5,080,398 _4609 Position (kb) 5079 5080Strain fitness (log2 ratio) -2 -1 0 1at 5078.315 kb on - strandat 5078.665 kb on + strand, within Pf1N1B4_4605at 5078.665 kb on + strandat 5078.665 kb on + strand, within Pf1N1B4_4605at 5078.668 kb on + strand, within Pf1N1B4_4605at 5078.719 kb on + strand, within Pf1N1B4_4605at 5078.720 kb on - strand, within Pf1N1B4_4605at 5078.890 kb on - strandat 5078.910 kb on + strandat 5078.911 kb on - strandat 5079.951 kb on + strandat 5079.956 kb on - strandat 5080.243 kb on - strand, within Pf1N1B4_4609at 5080.329 kb on + strand, within Pf1N1B4_4609

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
remove
5,078,315 - +1.1
5,078,665 + Pf1N1B4_4605 0.73 -0.6
5,078,665 + -1.5
5,078,665 + Pf1N1B4_4605 0.73 -1.2
5,078,668 + Pf1N1B4_4605 0.74 -1.8
5,078,719 + Pf1N1B4_4605 0.79 -1.5
5,078,720 - Pf1N1B4_4605 0.79 +1.1
5,078,890 - +0.5
5,078,910 + -1.2
5,078,911 - -2.1
5,079,951 + -0.5
5,079,956 - -1.0
5,080,243 - Pf1N1B4_4609 0.66 -1.1
5,080,329 + Pf1N1B4_4609 0.85 -1.8

Or see this region's nucleotide sequence