Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2035

Experiment: L-Glutamic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_2034 and Pf1N1B4_2035 are separated by 234 nucleotidesPf1N1B4_2035 and Pf1N1B4_2036 are separated by 15 nucleotides Pf1N1B4_2034 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 2,320,811 to 2,321,809 _2034 Pf1N1B4_2035 - Phosphate transport system permease protein PstC (TC 3.A.1.7.1), at 2,322,044 to 2,324,332 _2035 Pf1N1B4_2036 - Phosphate transport system permease protein PstA (TC 3.A.1.7.1), at 2,324,348 to 2,326,018 _2036 Position (kb) 2322 2323 2324 2325Strain fitness (log2 ratio) -3 -2 -1 0 1at 2321.726 kb on + strandat 2321.726 kb on + strandat 2321.727 kb on - strandat 2321.796 kb on + strandat 2321.796 kb on + strandat 2321.796 kb on + strandat 2321.796 kb on + strandat 2321.797 kb on - strandat 2321.797 kb on - strandat 2321.797 kb on - strandat 2321.797 kb on - strandat 2321.797 kb on - strandat 2321.797 kb on - strandat 2321.797 kb on - strandat 2321.797 kb on - strandat 2321.799 kb on + strandat 2321.799 kb on + strandat 2321.799 kb on + strandat 2321.799 kb on + strandat 2321.815 kb on + strandat 2321.897 kb on + strandat 2321.897 kb on + strandat 2321.897 kb on + strandat 2321.897 kb on + strandat 2321.897 kb on + strandat 2321.898 kb on - strandat 2321.898 kb on - strandat 2321.898 kb on - strandat 2321.898 kb on - strandat 2321.929 kb on - strandat 2322.027 kb on + strandat 2322.027 kb on + strandat 2322.110 kb on - strandat 2322.590 kb on + strand, within Pf1N1B4_2035at 2322.839 kb on + strand, within Pf1N1B4_2035at 2323.343 kb on + strand, within Pf1N1B4_2035at 2323.344 kb on - strand, within Pf1N1B4_2035at 2323.358 kb on + strand, within Pf1N1B4_2035at 2323.358 kb on + strand, within Pf1N1B4_2035at 2323.448 kb on + strand, within Pf1N1B4_2035at 2323.502 kb on + strand, within Pf1N1B4_2035at 2323.503 kb on - strand, within Pf1N1B4_2035at 2323.610 kb on + strand, within Pf1N1B4_2035at 2323.787 kb on + strand, within Pf1N1B4_2035at 2323.787 kb on + strand, within Pf1N1B4_2035at 2323.799 kb on + strand, within Pf1N1B4_2035at 2323.865 kb on + strand, within Pf1N1B4_2035at 2323.865 kb on + strand, within Pf1N1B4_2035at 2323.865 kb on + strand, within Pf1N1B4_2035at 2323.865 kb on + strand, within Pf1N1B4_2035at 2323.866 kb on - strand, within Pf1N1B4_2035at 2323.928 kb on + strand, within Pf1N1B4_2035at 2323.929 kb on - strand, within Pf1N1B4_2035at 2323.929 kb on - strand, within Pf1N1B4_2035at 2324.318 kb on + strandat 2324.330 kb on + strandat 2324.339 kb on + strandat 2324.339 kb on + strandat 2324.339 kb on + strandat 2324.339 kb on + strandat 2324.339 kb on + strandat 2324.339 kb on + strandat 2325.194 kb on + strand, within Pf1N1B4_2036at 2325.195 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
remove
2,321,726 + -0.1
2,321,726 + +1.2
2,321,727 - -0.0
2,321,796 + -0.1
2,321,796 + -1.1
2,321,796 + +0.4
2,321,796 + +0.6
2,321,797 - +0.4
2,321,797 - +0.4
2,321,797 - +1.4
2,321,797 - +0.4
2,321,797 - +0.4
2,321,797 - -0.6
2,321,797 - -0.7
2,321,797 - +0.8
2,321,799 + -0.4
2,321,799 + -0.1
2,321,799 + -1.6
2,321,799 + -2.8
2,321,815 + -0.0
2,321,897 + -1.1
2,321,897 + -1.1
2,321,897 + -0.8
2,321,897 + +0.4
2,321,897 + -1.1
2,321,898 - -0.8
2,321,898 - -1.1
2,321,898 - +1.7
2,321,898 - -1.1
2,321,929 - +0.0
2,322,027 + -0.6
2,322,027 + +1.4
2,322,110 - -1.0
2,322,590 + Pf1N1B4_2035 0.24 -1.4
2,322,839 + Pf1N1B4_2035 0.35 -1.6
2,323,343 + Pf1N1B4_2035 0.57 +0.4
2,323,344 - Pf1N1B4_2035 0.57 -0.6
2,323,358 + Pf1N1B4_2035 0.57 -0.1
2,323,358 + Pf1N1B4_2035 0.57 -1.1
2,323,448 + Pf1N1B4_2035 0.61 -0.8
2,323,502 + Pf1N1B4_2035 0.64 -0.6
2,323,503 - Pf1N1B4_2035 0.64 -0.9
2,323,610 + Pf1N1B4_2035 0.68 -0.6
2,323,787 + Pf1N1B4_2035 0.76 -1.0
2,323,787 + Pf1N1B4_2035 0.76 -0.1
2,323,799 + Pf1N1B4_2035 0.77 -0.6
2,323,865 + Pf1N1B4_2035 0.80 -0.1
2,323,865 + Pf1N1B4_2035 0.80 -1.4
2,323,865 + Pf1N1B4_2035 0.80 +0.4
2,323,865 + Pf1N1B4_2035 0.80 +0.2
2,323,866 - Pf1N1B4_2035 0.80 +1.4
2,323,928 + Pf1N1B4_2035 0.82 -1.1
2,323,929 - Pf1N1B4_2035 0.82 -1.8
2,323,929 - Pf1N1B4_2035 0.82 +1.0
2,324,318 + +1.4
2,324,330 + -0.9
2,324,339 + +0.8
2,324,339 + -0.6
2,324,339 + -0.6
2,324,339 + -2.1
2,324,339 + -0.7
2,324,339 + +0.0
2,325,194 + Pf1N1B4_2036 0.51 -0.9
2,325,195 - -1.1

Or see this region's nucleotide sequence