Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2027

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2026 and Pf1N1B4_2027 are separated by 334 nucleotidesPf1N1B4_2027 and Pf1N1B4_2028 are separated by 11 nucleotides Pf1N1B4_2026 - Transcriptional regulator, at 2,313,420 to 2,314,337 _2026 Pf1N1B4_2027 - Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21), at 2,314,672 to 2,315,163 _2027 Pf1N1B4_2028 - Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21), at 2,315,175 to 2,316,257 _2028 Position (kb) 2314 2315 2316Strain fitness (log2 ratio) -2 -1 0 1 2at 2313.867 kb on + strand, within Pf1N1B4_2026at 2313.867 kb on + strandat 2313.867 kb on + strand, within Pf1N1B4_2026at 2314.018 kb on - strand, within Pf1N1B4_2026at 2314.082 kb on + strand, within Pf1N1B4_2026at 2314.083 kb on - strand, within Pf1N1B4_2026at 2314.088 kb on + strand, within Pf1N1B4_2026at 2314.088 kb on + strand, within Pf1N1B4_2026at 2314.088 kb on + strand, within Pf1N1B4_2026at 2314.088 kb on + strand, within Pf1N1B4_2026at 2314.089 kb on - strand, within Pf1N1B4_2026at 2314.089 kb on - strand, within Pf1N1B4_2026at 2314.089 kb on - strandat 2314.092 kb on + strand, within Pf1N1B4_2026at 2314.092 kb on + strand, within Pf1N1B4_2026at 2314.331 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.456 kb on - strandat 2314.456 kb on - strandat 2314.484 kb on + strandat 2314.484 kb on + strandat 2314.506 kb on - strandat 2314.534 kb on + strandat 2314.535 kb on - strandat 2314.535 kb on - strandat 2314.551 kb on + strandat 2314.551 kb on + strandat 2314.551 kb on + strandat 2314.551 kb on + strandat 2314.552 kb on - strandat 2314.552 kb on - strandat 2314.553 kb on + strandat 2314.553 kb on + strandat 2314.553 kb on + strandat 2314.553 kb on + strandat 2314.553 kb on + strandat 2314.587 kb on + strandat 2314.594 kb on + strandat 2315.763 kb on + strand, within Pf1N1B4_2028

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,313,867 + Pf1N1B4_2026 0.49 -1.1
2,313,867 + +0.4
2,313,867 + Pf1N1B4_2026 0.49 -0.6
2,314,018 - Pf1N1B4_2026 0.65 -1.9
2,314,082 + Pf1N1B4_2026 0.72 -0.1
2,314,083 - Pf1N1B4_2026 0.72 -1.9
2,314,088 + Pf1N1B4_2026 0.73 -1.1
2,314,088 + Pf1N1B4_2026 0.73 -1.1
2,314,088 + Pf1N1B4_2026 0.73 -1.6
2,314,088 + Pf1N1B4_2026 0.73 +0.4
2,314,089 - Pf1N1B4_2026 0.73 -1.7
2,314,089 - Pf1N1B4_2026 0.73 +0.4
2,314,089 - +0.4
2,314,092 + Pf1N1B4_2026 0.73 -1.9
2,314,092 + Pf1N1B4_2026 0.73 -1.1
2,314,331 + +0.4
2,314,455 + -0.8
2,314,455 + +0.9
2,314,455 + -2.4
2,314,455 + -1.1
2,314,455 + -0.1
2,314,455 + -1.1
2,314,455 + +0.4
2,314,455 + +2.0
2,314,456 - +0.4
2,314,456 - -0.6
2,314,484 + +0.0
2,314,484 + +0.4
2,314,506 - -0.5
2,314,534 + +0.9
2,314,535 - -1.1
2,314,535 - +0.0
2,314,551 + +0.9
2,314,551 + -1.4
2,314,551 + -0.3
2,314,551 + -1.6
2,314,552 - -1.1
2,314,552 - +0.4
2,314,553 + -0.6
2,314,553 + -0.6
2,314,553 + +0.4
2,314,553 + +0.4
2,314,553 + +0.4
2,314,587 + -1.1
2,314,594 + -1.6
2,315,763 + Pf1N1B4_2028 0.54 -0.4

Or see this region's nucleotide sequence