Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1619 and Pf1N1B4_1620 are separated by 1 nucleotides Pf1N1B4_1620 and Pf1N1B4_1621 are separated by 104 nucleotides
Pf1N1B4_1619 - Carboxyl-terminal protease (EC 3.4.21.102), at 1,863,440 to 1,864,759
_1619
Pf1N1B4_1620 - Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase, at 1,864,761 to 1,865,558
_1620
Pf1N1B4_1621 - Trypsin domain protein, at 1,865,663 to 1,866,901
_1621
Position (kb)
1864
1865
1866 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1863.873 kb on + strand, within Pf1N1B4_1619 at 1863.873 kb on + strand, within Pf1N1B4_1619 at 1863.873 kb on + strand, within Pf1N1B4_1619 at 1863.873 kb on + strand, within Pf1N1B4_1619 at 1863.873 kb on + strand, within Pf1N1B4_1619 at 1863.874 kb on - strand, within Pf1N1B4_1619 at 1863.874 kb on - strand, within Pf1N1B4_1619 at 1863.874 kb on - strand, within Pf1N1B4_1619 at 1863.969 kb on + strand, within Pf1N1B4_1619 at 1864.065 kb on - strand, within Pf1N1B4_1619 at 1864.177 kb on + strand, within Pf1N1B4_1619 at 1864.178 kb on - strand, within Pf1N1B4_1619 at 1864.178 kb on - strand, within Pf1N1B4_1619 at 1864.250 kb on + strand, within Pf1N1B4_1619 at 1864.250 kb on + strand, within Pf1N1B4_1619 at 1864.251 kb on - strand, within Pf1N1B4_1619 at 1864.251 kb on - strand, within Pf1N1B4_1619 at 1864.251 kb on - strand, within Pf1N1B4_1619 at 1864.496 kb on + strand, within Pf1N1B4_1619 at 1864.496 kb on + strand, within Pf1N1B4_1619 at 1864.496 kb on + strand, within Pf1N1B4_1619 at 1864.496 kb on + strand, within Pf1N1B4_1619 at 1864.496 kb on + strand, within Pf1N1B4_1619 at 1864.496 kb on + strand, within Pf1N1B4_1619 at 1864.496 kb on + strand, within Pf1N1B4_1619 at 1864.496 kb on + strand, within Pf1N1B4_1619 at 1864.496 kb on + strand, within Pf1N1B4_1619 at 1864.497 kb on - strand, within Pf1N1B4_1619 at 1864.497 kb on - strand, within Pf1N1B4_1619 at 1864.497 kb on - strand, within Pf1N1B4_1619 at 1864.497 kb on - strand, within Pf1N1B4_1619 at 1864.497 kb on - strand, within Pf1N1B4_1619 at 1864.497 kb on - strand, within Pf1N1B4_1619 at 1864.497 kb on - strand, within Pf1N1B4_1619 at 1864.499 kb on + strand, within Pf1N1B4_1619 at 1864.499 kb on + strand, within Pf1N1B4_1619 at 1864.499 kb on + strand, within Pf1N1B4_1619 at 1864.499 kb on + strand, within Pf1N1B4_1619 at 1864.499 kb on + strand, within Pf1N1B4_1619 at 1864.499 kb on + strand, within Pf1N1B4_1619 at 1864.499 kb on + strand, within Pf1N1B4_1619 at 1864.499 kb on + strand, within Pf1N1B4_1619 at 1864.499 kb on + strand, within Pf1N1B4_1619 at 1864.499 kb on + strand, within Pf1N1B4_1619 at 1864.499 kb on + strand, within Pf1N1B4_1619 at 1864.499 kb on + strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.500 kb on - strand, within Pf1N1B4_1619 at 1864.592 kb on + strand, within Pf1N1B4_1619 at 1864.593 kb on - strand, within Pf1N1B4_1619 at 1864.593 kb on - strand, within Pf1N1B4_1619 at 1864.593 kb on - strand, within Pf1N1B4_1619 at 1864.593 kb on - strand, within Pf1N1B4_1619 at 1864.593 kb on - strand, within Pf1N1B4_1619 at 1864.593 kb on - strand, within Pf1N1B4_1619 at 1864.593 kb on - strand, within Pf1N1B4_1619 at 1864.649 kb on - strand at 1864.854 kb on + strand, within Pf1N1B4_1620 at 1864.854 kb on + strand, within Pf1N1B4_1620 at 1864.854 kb on + strand, within Pf1N1B4_1620 at 1864.855 kb on - strand, within Pf1N1B4_1620 at 1864.855 kb on - strand, within Pf1N1B4_1620 at 1864.855 kb on - strand, within Pf1N1B4_1620 at 1864.855 kb on - strand, within Pf1N1B4_1620 at 1864.855 kb on - strand, within Pf1N1B4_1620 at 1864.855 kb on - strand, within Pf1N1B4_1620 at 1865.115 kb on + strand, within Pf1N1B4_1620 at 1865.116 kb on - strand, within Pf1N1B4_1620 at 1865.118 kb on - strand at 1865.129 kb on - strand, within Pf1N1B4_1620 at 1865.129 kb on - strand, within Pf1N1B4_1620 at 1865.129 kb on - strand, within Pf1N1B4_1620 at 1865.129 kb on - strand, within Pf1N1B4_1620 at 1865.129 kb on - strand, within Pf1N1B4_1620 at 1865.341 kb on + strand, within Pf1N1B4_1620 at 1865.342 kb on - strand, within Pf1N1B4_1620 at 1865.342 kb on - strand, within Pf1N1B4_1620 at 1865.351 kb on + strand, within Pf1N1B4_1620 at 1865.556 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.590 kb on + strand at 1865.591 kb on - strand at 1865.591 kb on - strand at 1865.591 kb on - strand at 1865.591 kb on - strand at 1865.591 kb on - strand at 1865.591 kb on - strand at 1865.591 kb on - strand at 1865.591 kb on - strand at 1865.591 kb on - strand at 1865.591 kb on - strand at 1865.591 kb on - strand at 1865.591 kb on - strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.594 kb on + strand at 1865.595 kb on - strand at 1865.595 kb on - strand at 1865.595 kb on - strand at 1865.595 kb on - strand at 1865.595 kb on - strand at 1865.595 kb on - strand at 1865.595 kb on - strand at 1865.595 kb on - strand at 1865.595 kb on - strand at 1865.595 kb on - strand at 1865.595 kb on - strand at 1865.595 kb on - strand at 1865.596 kb on + strand at 1865.596 kb on + strand at 1865.596 kb on + strand at 1865.596 kb on + strand at 1865.597 kb on - strand at 1865.597 kb on - strand at 1865.597 kb on - strand at 1865.597 kb on - strand at 1865.669 kb on + strand at 1865.669 kb on + strand at 1865.670 kb on - strand at 1865.670 kb on - strand at 1865.670 kb on - strand at 1865.670 kb on - strand at 1865.713 kb on + strand at 1865.713 kb on + strand at 1865.714 kb on - strand at 1865.714 kb on - strand at 1865.714 kb on - strand at 1865.714 kb on - strand at 1865.863 kb on - strand, within Pf1N1B4_1621 at 1865.863 kb on - strand, within Pf1N1B4_1621 at 1865.906 kb on + strand, within Pf1N1B4_1621 at 1865.906 kb on + strand, within Pf1N1B4_1621 at 1865.907 kb on - strand, within Pf1N1B4_1621 at 1865.907 kb on - strand, within Pf1N1B4_1621 at 1865.932 kb on - strand, within Pf1N1B4_1621 at 1865.932 kb on - strand, within Pf1N1B4_1621 at 1865.993 kb on + strand, within Pf1N1B4_1621 at 1866.006 kb on + strand, within Pf1N1B4_1621 at 1866.006 kb on + strand, within Pf1N1B4_1621 at 1866.007 kb on - strand, within Pf1N1B4_1621 at 1866.007 kb on - strand, within Pf1N1B4_1621 at 1866.016 kb on + strand, within Pf1N1B4_1621 at 1866.017 kb on - strand, within Pf1N1B4_1621 at 1866.027 kb on - strand, within Pf1N1B4_1621 at 1866.027 kb on - strand, within Pf1N1B4_1621 at 1866.078 kb on + strand, within Pf1N1B4_1621 at 1866.087 kb on + strand, within Pf1N1B4_1621 at 1866.087 kb on + strand, within Pf1N1B4_1621 at 1866.087 kb on + strand, within Pf1N1B4_1621 at 1866.087 kb on + strand, within Pf1N1B4_1621 at 1866.112 kb on - strand, within Pf1N1B4_1621 at 1866.156 kb on - strand, within Pf1N1B4_1621 at 1866.370 kb on + strand, within Pf1N1B4_1621 at 1866.449 kb on + strand, within Pf1N1B4_1621 at 1866.449 kb on + strand, within Pf1N1B4_1621 at 1866.449 kb on + strand, within Pf1N1B4_1621 at 1866.449 kb on + strand at 1866.450 kb on - strand, within Pf1N1B4_1621 at 1866.450 kb on - strand, within Pf1N1B4_1621 at 1866.455 kb on + strand, within Pf1N1B4_1621 at 1866.455 kb on + strand, within Pf1N1B4_1621 at 1866.456 kb on - strand, within Pf1N1B4_1621 at 1866.484 kb on + strand, within Pf1N1B4_1621 at 1866.484 kb on + strand, within Pf1N1B4_1621 at 1866.485 kb on - strand, within Pf1N1B4_1621
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 1,863,873 + Pf1N1B4_1619 0.33 -0.7 1,863,873 + Pf1N1B4_1619 0.33 -2.0 1,863,873 + Pf1N1B4_1619 0.33 +1.3 1,863,873 + Pf1N1B4_1619 0.33 +1.9 1,863,873 + Pf1N1B4_1619 0.33 +0.3 1,863,874 - Pf1N1B4_1619 0.33 -0.7 1,863,874 - Pf1N1B4_1619 0.33 -1.2 1,863,874 - Pf1N1B4_1619 0.33 -2.5 1,863,969 + Pf1N1B4_1619 0.40 -0.7 1,864,065 - Pf1N1B4_1619 0.47 -0.3 1,864,177 + Pf1N1B4_1619 0.56 +1.3 1,864,178 - Pf1N1B4_1619 0.56 -0.5 1,864,178 - Pf1N1B4_1619 0.56 -0.1 1,864,250 + Pf1N1B4_1619 0.61 -0.7 1,864,250 + Pf1N1B4_1619 0.61 +0.3 1,864,251 - Pf1N1B4_1619 0.61 -2.5 1,864,251 - Pf1N1B4_1619 0.61 +0.3 1,864,251 - Pf1N1B4_1619 0.61 -0.7 1,864,496 + Pf1N1B4_1619 0.80 -1.5 1,864,496 + Pf1N1B4_1619 0.80 -0.7 1,864,496 + Pf1N1B4_1619 0.80 -0.9 1,864,496 + Pf1N1B4_1619 0.80 -0.4 1,864,496 + Pf1N1B4_1619 0.80 -2.2 1,864,496 + Pf1N1B4_1619 0.80 -1.7 1,864,496 + Pf1N1B4_1619 0.80 -0.7 1,864,496 + Pf1N1B4_1619 0.80 +0.3 1,864,496 + Pf1N1B4_1619 0.80 -0.2 1,864,497 - Pf1N1B4_1619 0.80 -1.7 1,864,497 - Pf1N1B4_1619 0.80 -1.0 1,864,497 - Pf1N1B4_1619 0.80 +0.8 1,864,497 - Pf1N1B4_1619 0.80 -1.2 1,864,497 - Pf1N1B4_1619 0.80 -1.2 1,864,497 - Pf1N1B4_1619 0.80 -2.2 1,864,497 - Pf1N1B4_1619 0.80 +0.3 1,864,499 + Pf1N1B4_1619 0.80 +0.8 1,864,499 + Pf1N1B4_1619 0.80 -0.9 1,864,499 + Pf1N1B4_1619 0.80 -0.7 1,864,499 + Pf1N1B4_1619 0.80 -2.0 1,864,499 + Pf1N1B4_1619 0.80 -0.4 1,864,499 + Pf1N1B4_1619 0.80 -1.2 1,864,499 + Pf1N1B4_1619 0.80 -1.7 1,864,499 + Pf1N1B4_1619 0.80 -1.2 1,864,499 + Pf1N1B4_1619 0.80 +0.0 1,864,499 + Pf1N1B4_1619 0.80 -2.2 1,864,499 + Pf1N1B4_1619 0.80 -0.2 1,864,499 + Pf1N1B4_1619 0.80 +0.3 1,864,500 - Pf1N1B4_1619 0.80 -1.1 1,864,500 - Pf1N1B4_1619 0.80 +0.3 1,864,500 - Pf1N1B4_1619 0.80 -0.2 1,864,500 - Pf1N1B4_1619 0.80 +2.1 1,864,500 - Pf1N1B4_1619 0.80 -1.2 1,864,500 - Pf1N1B4_1619 0.80 +0.3 1,864,500 - Pf1N1B4_1619 0.80 +1.3 1,864,500 - Pf1N1B4_1619 0.80 -2.0 1,864,500 - Pf1N1B4_1619 0.80 -0.7 1,864,500 - Pf1N1B4_1619 0.80 +1.9 1,864,500 - Pf1N1B4_1619 0.80 -0.7 1,864,500 - Pf1N1B4_1619 0.80 -2.0 1,864,500 - Pf1N1B4_1619 0.80 -0.7 1,864,500 - Pf1N1B4_1619 0.80 -0.2 1,864,592 + Pf1N1B4_1619 0.87 -1.0 1,864,593 - Pf1N1B4_1619 0.87 -0.7 1,864,593 - Pf1N1B4_1619 0.87 +0.3 1,864,593 - Pf1N1B4_1619 0.87 -1.2 1,864,593 - Pf1N1B4_1619 0.87 -1.2 1,864,593 - Pf1N1B4_1619 0.87 +0.9 1,864,593 - Pf1N1B4_1619 0.87 +0.3 1,864,593 - Pf1N1B4_1619 0.87 +2.3 1,864,649 - +0.3 1,864,854 + Pf1N1B4_1620 0.12 -0.2 1,864,854 + Pf1N1B4_1620 0.12 -2.0 1,864,854 + Pf1N1B4_1620 0.12 -0.2 1,864,855 - Pf1N1B4_1620 0.12 +0.8 1,864,855 - Pf1N1B4_1620 0.12 -0.7 1,864,855 - Pf1N1B4_1620 0.12 -0.7 1,864,855 - Pf1N1B4_1620 0.12 -0.4 1,864,855 - Pf1N1B4_1620 0.12 -0.0 1,864,855 - Pf1N1B4_1620 0.12 -0.2 1,865,115 + Pf1N1B4_1620 0.44 -1.0 1,865,116 - Pf1N1B4_1620 0.44 -2.8 1,865,118 - -0.7 1,865,129 - Pf1N1B4_1620 0.46 -0.7 1,865,129 - Pf1N1B4_1620 0.46 -0.7 1,865,129 - Pf1N1B4_1620 0.46 -0.7 1,865,129 - Pf1N1B4_1620 0.46 -0.0 1,865,129 - Pf1N1B4_1620 0.46 -0.3 1,865,341 + Pf1N1B4_1620 0.73 -1.2 1,865,342 - Pf1N1B4_1620 0.73 +0.3 1,865,342 - Pf1N1B4_1620 0.73 -0.8 1,865,351 + Pf1N1B4_1620 0.74 -1.5 1,865,556 + -0.2 1,865,590 + +1.9 1,865,590 + -0.4 1,865,590 + +0.3 1,865,590 + -0.3 1,865,590 + +0.1 1,865,590 + +0.3 1,865,590 + +0.3 1,865,590 + -0.2 1,865,590 + -0.7 1,865,590 + +1.1 1,865,590 + -0.7 1,865,590 + -0.2 1,865,590 + -0.2 1,865,590 + -1.5 1,865,590 + -0.4 1,865,590 + +2.7 1,865,590 + -0.6 1,865,590 + -0.9 1,865,590 + -0.8 1,865,590 + -0.8 1,865,591 - +0.3 1,865,591 - -0.9 1,865,591 - -1.0 1,865,591 - -2.5 1,865,591 - +2.7 1,865,591 - -0.7 1,865,591 - +0.3 1,865,591 - +1.3 1,865,591 - -0.1 1,865,591 - +0.0 1,865,591 - -2.1 1,865,591 - -0.5 1,865,594 + -1.0 1,865,594 + -2.5 1,865,594 + +0.0 1,865,594 + -0.1 1,865,594 + -0.7 1,865,594 + +0.3 1,865,594 + -1.2 1,865,594 + +0.8 1,865,594 + -0.7 1,865,594 + -2.1 1,865,594 + +0.8 1,865,594 + -0.2 1,865,594 + +0.1 1,865,594 + -0.1 1,865,595 - -1.7 1,865,595 - -1.2 1,865,595 - +0.9 1,865,595 - -0.9 1,865,595 - -0.1 1,865,595 - +0.3 1,865,595 - -2.0 1,865,595 - -0.2 1,865,595 - -0.7 1,865,595 - -2.0 1,865,595 - -0.5 1,865,595 - -0.8 1,865,596 + +1.1 1,865,596 + -0.5 1,865,596 + -1.1 1,865,596 + +0.3 1,865,597 - +0.3 1,865,597 - +0.3 1,865,597 - -2.2 1,865,597 - -1.7 1,865,669 + +0.3 1,865,669 + +0.3 1,865,670 - -1.2 1,865,670 - +1.3 1,865,670 - -1.7 1,865,670 - +0.3 1,865,713 + -0.0 1,865,713 + +0.3 1,865,714 - +0.3 1,865,714 - -0.7 1,865,714 - -0.5 1,865,714 - -0.5 1,865,863 - Pf1N1B4_1621 0.16 -0.2 1,865,863 - Pf1N1B4_1621 0.16 -0.2 1,865,906 + Pf1N1B4_1621 0.20 -0.7 1,865,906 + Pf1N1B4_1621 0.20 -1.3 1,865,907 - Pf1N1B4_1621 0.20 +1.1 1,865,907 - Pf1N1B4_1621 0.20 +0.3 1,865,932 - Pf1N1B4_1621 0.22 -1.0 1,865,932 - Pf1N1B4_1621 0.22 +1.3 1,865,993 + Pf1N1B4_1621 0.27 -0.5 1,866,006 + Pf1N1B4_1621 0.28 +1.3 1,866,006 + Pf1N1B4_1621 0.28 +0.0 1,866,007 - Pf1N1B4_1621 0.28 -1.7 1,866,007 - Pf1N1B4_1621 0.28 -0.1 1,866,016 + Pf1N1B4_1621 0.28 -0.1 1,866,017 - Pf1N1B4_1621 0.29 +0.6 1,866,027 - Pf1N1B4_1621 0.29 +1.1 1,866,027 - Pf1N1B4_1621 0.29 -0.5 1,866,078 + Pf1N1B4_1621 0.33 -0.1 1,866,087 + Pf1N1B4_1621 0.34 -0.1 1,866,087 + Pf1N1B4_1621 0.34 +0.8 1,866,087 + Pf1N1B4_1621 0.34 -0.5 1,866,087 + Pf1N1B4_1621 0.34 +0.8 1,866,112 - Pf1N1B4_1621 0.36 +0.3 1,866,156 - Pf1N1B4_1621 0.40 -2.0 1,866,370 + Pf1N1B4_1621 0.57 -1.0 1,866,449 + Pf1N1B4_1621 0.63 -0.2 1,866,449 + Pf1N1B4_1621 0.63 -0.4 1,866,449 + Pf1N1B4_1621 0.63 -1.7 1,866,449 + +0.3 1,866,450 - Pf1N1B4_1621 0.64 -0.7 1,866,450 - Pf1N1B4_1621 0.64 -2.2 1,866,455 + Pf1N1B4_1621 0.64 +0.3 1,866,455 + Pf1N1B4_1621 0.64 +1.1 1,866,456 - Pf1N1B4_1621 0.64 -0.2 1,866,484 + Pf1N1B4_1621 0.66 +1.9 1,866,484 + Pf1N1B4_1621 0.66 -0.1 1,866,485 - Pf1N1B4_1621 0.66 +0.0
Or see this region's nucleotide sequence