Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1077 and Pf1N1B4_1078 are separated by 43 nucleotides Pf1N1B4_1078 and Pf1N1B4_1079 overlap by 1 nucleotides Pf1N1B4_1079 and Pf1N1B4_1080 are separated by 209 nucleotides
Pf1N1B4_1077 - Uncharacterized protein YrbK clustered with lipopolysaccharide transporters, at 1,210,133 to 1,210,705
_1077
Pf1N1B4_1078 - LptA, protein essential for LPS transport across the periplasm, at 1,210,749 to 1,211,240
_1078
Pf1N1B4_1079 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 1,211,240 to 1,211,965
_1079
Pf1N1B4_1080 - RNA polymerase sigma-54 factor RpoN, at 1,212,175 to 1,213,644
_1080
Position (kb)
1211
1212 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1210.680 kb on + strand at 1211.964 kb on - strand at 1211.964 kb on - strand at 1211.964 kb on - strand at 1212.009 kb on - strand at 1212.027 kb on + strand at 1212.027 kb on + strand at 1212.028 kb on - strand at 1212.033 kb on + strand at 1212.033 kb on + strand at 1212.034 kb on - strand at 1212.044 kb on - strand at 1212.044 kb on - strand at 1212.044 kb on - strand at 1212.071 kb on - strand at 1212.071 kb on - strand at 1212.103 kb on + strand at 1212.131 kb on + strand at 1212.139 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 1,210,680 + -0.6 1,211,964 - -0.5 1,211,964 - +0.9 1,211,964 - -0.5 1,212,009 - +0.9 1,212,027 + +0.2 1,212,027 + +0.6 1,212,028 - -1.9 1,212,033 + +1.1 1,212,033 + +0.1 1,212,034 - +0.1 1,212,044 - +0.1 1,212,044 - -2.2 1,212,044 - -3.1 1,212,071 - -1.9 1,212,071 - -2.2 1,212,103 + -3.1 1,212,131 + +0.1 1,212,139 + +0.1
Or see this region's nucleotide sequence