Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_976 and Ac3H11_977 are separated by 71 nucleotides Ac3H11_977 and Ac3H11_978 are separated by 55 nucleotides Ac3H11_978 and Ac3H11_979 are separated by 30 nucleotides
Ac3H11_976 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 97,949 to 99,331
_976
Ac3H11_977 - Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein, at 99,403 to 100,080
_977
Ac3H11_978 - hypothetical protein, at 100,136 to 100,297
_978
Ac3H11_979 - HD-GYP domain, at 100,328 to 101,626
_979
Position (kb) 100
101 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 99.152 kb on + strand, within Ac3H11_976 at 99.152 kb on + strand, within Ac3H11_976 at 99.153 kb on - strand, within Ac3H11_976 at 99.153 kb on - strand, within Ac3H11_976 at 99.285 kb on - strand at 99.336 kb on + strand at 99.336 kb on + strand at 99.336 kb on + strand at 99.336 kb on + strand at 99.337 kb on - strand at 99.337 kb on - strand at 99.565 kb on + strand, within Ac3H11_977 at 99.619 kb on - strand, within Ac3H11_977 at 99.833 kb on - strand, within Ac3H11_977 at 99.833 kb on - strand, within Ac3H11_977 at 100.054 kb on + strand at 100.054 kb on + strand at 100.055 kb on - strand at 100.249 kb on + strand, within Ac3H11_978 at 100.249 kb on + strand, within Ac3H11_978 at 100.249 kb on + strand, within Ac3H11_978 at 100.250 kb on - strand, within Ac3H11_978 at 100.250 kb on - strand, within Ac3H11_978 at 100.250 kb on - strand, within Ac3H11_978 at 100.263 kb on + strand, within Ac3H11_978 at 100.263 kb on + strand, within Ac3H11_978 at 100.264 kb on - strand, within Ac3H11_978 at 100.264 kb on - strand, within Ac3H11_978 at 100.282 kb on + strand at 100.282 kb on + strand at 100.282 kb on + strand at 100.286 kb on + strand at 100.286 kb on + strand at 100.286 kb on + strand at 100.286 kb on + strand at 100.286 kb on + strand at 100.286 kb on + strand at 100.287 kb on - strand at 100.287 kb on - strand at 100.376 kb on + strand at 100.376 kb on + strand at 100.376 kb on + strand at 100.376 kb on + strand at 100.376 kb on + strand at 100.376 kb on + strand at 100.376 kb on + strand at 100.376 kb on + strand at 100.376 kb on + strand at 100.376 kb on + strand at 100.377 kb on - strand at 100.377 kb on - strand at 100.377 kb on - strand at 100.377 kb on - strand at 100.377 kb on - strand at 100.490 kb on + strand, within Ac3H11_979 at 100.490 kb on + strand, within Ac3H11_979 at 100.490 kb on + strand, within Ac3H11_979 at 100.490 kb on + strand, within Ac3H11_979 at 100.491 kb on - strand, within Ac3H11_979 at 100.491 kb on - strand, within Ac3H11_979 at 100.609 kb on - strand, within Ac3H11_979 at 100.703 kb on + strand, within Ac3H11_979 at 100.703 kb on + strand, within Ac3H11_979 at 100.862 kb on - strand, within Ac3H11_979 at 100.876 kb on + strand, within Ac3H11_979 at 100.876 kb on + strand, within Ac3H11_979 at 100.877 kb on - strand, within Ac3H11_979 at 100.877 kb on - strand, within Ac3H11_979 at 101.224 kb on + strand, within Ac3H11_979 at 101.224 kb on + strand, within Ac3H11_979 at 101.224 kb on + strand, within Ac3H11_979
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 99,152 + Ac3H11_976 0.87 +1.5 99,152 + Ac3H11_976 0.87 +0.1 99,153 - Ac3H11_976 0.87 -1.5 99,153 - Ac3H11_976 0.87 +0.2 99,285 - +1.5 99,336 + +0.3 99,336 + -0.1 99,336 + -2.7 99,336 + +1.4 99,337 - +1.4 99,337 - +3.3 99,565 + Ac3H11_977 0.24 +0.7 99,619 - Ac3H11_977 0.32 -1.2 99,833 - Ac3H11_977 0.63 +1.6 99,833 - Ac3H11_977 0.63 -0.6 100,054 + -1.8 100,054 + +0.7 100,055 - -0.2 100,249 + Ac3H11_978 0.70 +1.6 100,249 + Ac3H11_978 0.70 +1.5 100,249 + Ac3H11_978 0.70 -1.2 100,250 - Ac3H11_978 0.70 -0.9 100,250 - Ac3H11_978 0.70 -0.4 100,250 - Ac3H11_978 0.70 +3.4 100,263 + Ac3H11_978 0.78 +0.9 100,263 + Ac3H11_978 0.78 +1.7 100,264 - Ac3H11_978 0.79 -0.2 100,264 - Ac3H11_978 0.79 -0.3 100,282 + +1.9 100,282 + -0.6 100,282 + -1.8 100,286 + -1.6 100,286 + -0.9 100,286 + +0.9 100,286 + -1.6 100,286 + +0.3 100,286 + -1.7 100,287 - +1.1 100,287 - -0.8 100,376 + +0.0 100,376 + +0.2 100,376 + -1.2 100,376 + -1.1 100,376 + -1.5 100,376 + -1.1 100,376 + -1.6 100,376 + +3.1 100,376 + -0.1 100,376 + +1.0 100,377 - -0.4 100,377 - -0.8 100,377 - -1.2 100,377 - -1.4 100,377 - -1.5 100,490 + Ac3H11_979 0.12 -0.9 100,490 + Ac3H11_979 0.12 +0.9 100,490 + Ac3H11_979 0.12 -1.2 100,490 + Ac3H11_979 0.12 +0.1 100,491 - Ac3H11_979 0.13 +1.0 100,491 - Ac3H11_979 0.13 -0.9 100,609 - Ac3H11_979 0.22 -0.7 100,703 + Ac3H11_979 0.29 -0.6 100,703 + Ac3H11_979 0.29 -1.2 100,862 - Ac3H11_979 0.41 -0.2 100,876 + Ac3H11_979 0.42 -1.1 100,876 + Ac3H11_979 0.42 -2.2 100,877 - Ac3H11_979 0.42 +0.8 100,877 - Ac3H11_979 0.42 -1.9 101,224 + Ac3H11_979 0.69 -0.3 101,224 + Ac3H11_979 0.69 -0.3 101,224 + Ac3H11_979 0.69 +0.1
Or see this region's nucleotide sequence