Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_836

Experiment: LB, pH10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_834 and Ac3H11_835 are separated by 159 nucleotidesAc3H11_835 and Ac3H11_836 are separated by 44 nucleotidesAc3H11_836 and Ac3H11_837 overlap by 14 nucleotidesAc3H11_837 and Ac3H11_838 overlap by 4 nucleotides Ac3H11_834 - putative signal peptide protein, at 117,566 to 118,021 _834 Ac3H11_835 - hypothetical protein, at 118,181 to 118,561 _835 Ac3H11_836 - Ubiquinone biosynthesis monooxygenase UbiB, at 118,606 to 119,946 _836 Ac3H11_837 - conserved hypothetical protein, at 119,933 to 120,508 _837 Ac3H11_838 - transcriptional regulator, TetR family, at 120,505 to 121,374 _838 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 117.730 kb on - strand, within Ac3H11_834at 117.735 kb on + strand, within Ac3H11_834at 117.736 kb on - strand, within Ac3H11_834at 117.873 kb on + strand, within Ac3H11_834at 117.873 kb on + strand, within Ac3H11_834at 117.874 kb on - strand, within Ac3H11_834at 117.874 kb on - strand, within Ac3H11_834at 117.874 kb on - strand, within Ac3H11_834at 117.874 kb on - strand, within Ac3H11_834at 117.874 kb on - strand, within Ac3H11_834at 117.995 kb on + strandat 117.996 kb on - strandat 117.996 kb on - strandat 118.092 kb on + strandat 118.092 kb on + strandat 118.092 kb on + strandat 118.092 kb on + strandat 118.093 kb on - strandat 118.093 kb on - strandat 118.093 kb on - strandat 118.093 kb on - strandat 118.093 kb on - strandat 118.093 kb on - strandat 118.093 kb on - strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.880 kb on + strand, within Ac3H11_836at 118.880 kb on + strand, within Ac3H11_836at 118.880 kb on + strand, within Ac3H11_836at 118.880 kb on + strand, within Ac3H11_836at 118.881 kb on - strand, within Ac3H11_836at 118.881 kb on - strand, within Ac3H11_836at 118.881 kb on - strand, within Ac3H11_836at 118.881 kb on - strand, within Ac3H11_836at 118.925 kb on + strandat 118.926 kb on - strand, within Ac3H11_836at 119.339 kb on + strand, within Ac3H11_836at 119.339 kb on + strand, within Ac3H11_836at 119.340 kb on - strand, within Ac3H11_836at 119.340 kb on - strand, within Ac3H11_836at 119.340 kb on - strand, within Ac3H11_836at 119.492 kb on + strand, within Ac3H11_836at 119.492 kb on + strand, within Ac3H11_836at 119.492 kb on + strand, within Ac3H11_836at 119.492 kb on + strand, within Ac3H11_836at 119.493 kb on - strand, within Ac3H11_836at 119.934 kb on + strandat 119.934 kb on + strandat 119.934 kb on + strandat 119.934 kb on + strandat 119.934 kb on + strandat 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.012 kb on + strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.013 kb on - strand, within Ac3H11_837at 120.344 kb on + strand, within Ac3H11_837at 120.345 kb on - strand, within Ac3H11_837at 120.345 kb on - strand, within Ac3H11_837at 120.345 kb on - strand, within Ac3H11_837at 120.345 kb on - strand, within Ac3H11_837at 120.399 kb on + strand, within Ac3H11_837at 120.400 kb on - strand, within Ac3H11_837at 120.400 kb on - strand, within Ac3H11_837at 120.455 kb on + strandat 120.456 kb on - strandat 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.864 kb on - strand, within Ac3H11_838at 120.884 kb on + strand, within Ac3H11_838at 120.885 kb on - strand, within Ac3H11_838at 120.885 kb on - strand, within Ac3H11_838at 120.885 kb on - strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
remove
117,730 - Ac3H11_834 0.36 +0.7
117,735 + Ac3H11_834 0.37 -2.4
117,736 - Ac3H11_834 0.37 -1.0
117,873 + Ac3H11_834 0.67 -0.6
117,873 + Ac3H11_834 0.67 +1.0
117,874 - Ac3H11_834 0.68 +0.5
117,874 - Ac3H11_834 0.68 -1.4
117,874 - Ac3H11_834 0.68 +1.0
117,874 - Ac3H11_834 0.68 +0.5
117,874 - Ac3H11_834 0.68 +1.1
117,995 + -1.0
117,996 - +0.5
117,996 - -1.5
118,092 + +0.1
118,092 + +0.9
118,092 + -2.0
118,092 + -0.6
118,093 - -2.7
118,093 - +1.3
118,093 - -2.0
118,093 - +2.1
118,093 - +0.3
118,093 - +0.4
118,093 - +0.1
118,555 + +0.6
118,555 + +0.1
118,555 + -0.3
118,555 + +1.8
118,555 + -1.4
118,555 + -2.4
118,555 + -1.3
118,555 + -0.3
118,555 + -0.5
118,555 + -1.2
118,555 + +4.4
118,555 + +0.2
118,555 + -1.2
118,555 + -0.8
118,555 + -0.2
118,555 + -2.0
118,556 - -0.1
118,556 - +0.4
118,556 - +1.1
118,556 - +0.5
118,556 - +0.2
118,556 - -0.2
118,556 - -0.7
118,556 - +0.8
118,556 - -0.6
118,556 - -0.8
118,556 - +0.3
118,556 - +0.2
118,556 - +0.0
118,556 - +0.4
118,556 - +1.1
118,880 + Ac3H11_836 0.20 -0.5
118,880 + Ac3H11_836 0.20 -0.0
118,880 + Ac3H11_836 0.20 -1.9
118,880 + Ac3H11_836 0.20 -0.6
118,881 - Ac3H11_836 0.21 +0.9
118,881 - Ac3H11_836 0.21 +1.8
118,881 - Ac3H11_836 0.21 +2.1
118,881 - Ac3H11_836 0.21 +1.1
118,925 + +1.8
118,926 - Ac3H11_836 0.24 +0.5
119,339 + Ac3H11_836 0.55 +1.7
119,339 + Ac3H11_836 0.55 -1.2
119,340 - Ac3H11_836 0.55 -1.7
119,340 - Ac3H11_836 0.55 +1.3
119,340 - Ac3H11_836 0.55 -1.5
119,492 + Ac3H11_836 0.66 -1.2
119,492 + Ac3H11_836 0.66 +0.7
119,492 + Ac3H11_836 0.66 -2.2
119,492 + Ac3H11_836 0.66 +0.0
119,493 - Ac3H11_836 0.66 -0.3
119,934 + -0.1
119,934 + +2.5
119,934 + -2.4
119,934 + +0.7
119,934 + +0.7
120,012 + Ac3H11_837 0.14 +2.7
120,012 + Ac3H11_837 0.14 -0.1
120,012 + Ac3H11_837 0.14 -2.0
120,012 + Ac3H11_837 0.14 +0.2
120,012 + Ac3H11_837 0.14 -0.8
120,012 + Ac3H11_837 0.14 -1.3
120,012 + Ac3H11_837 0.14 +1.0
120,012 + Ac3H11_837 0.14 -0.2
120,012 + Ac3H11_837 0.14 -1.6
120,012 + Ac3H11_837 0.14 -0.2
120,012 + Ac3H11_837 0.14 +0.3
120,012 + Ac3H11_837 0.14 -0.8
120,012 + Ac3H11_837 0.14 -1.4
120,012 + Ac3H11_837 0.14 -0.1
120,012 + Ac3H11_837 0.14 +0.7
120,012 + Ac3H11_837 0.14 +1.8
120,012 + Ac3H11_837 0.14 -0.5
120,012 + Ac3H11_837 0.14 +0.0
120,012 + Ac3H11_837 0.14 -0.5
120,013 - Ac3H11_837 0.14 -3.4
120,013 - Ac3H11_837 0.14 -0.2
120,013 - Ac3H11_837 0.14 +0.7
120,013 - Ac3H11_837 0.14 -0.8
120,013 - Ac3H11_837 0.14 +0.0
120,013 - Ac3H11_837 0.14 -2.8
120,013 - Ac3H11_837 0.14 +0.7
120,013 - Ac3H11_837 0.14 -0.3
120,013 - Ac3H11_837 0.14 -0.4
120,013 - Ac3H11_837 0.14 -0.9
120,013 - Ac3H11_837 0.14 +0.6
120,013 - Ac3H11_837 0.14 -1.8
120,013 - Ac3H11_837 0.14 -0.9
120,013 - Ac3H11_837 0.14 -0.2
120,013 - Ac3H11_837 0.14 +1.3
120,013 - Ac3H11_837 0.14 -0.6
120,013 - Ac3H11_837 0.14 +0.3
120,013 - Ac3H11_837 0.14 -2.9
120,013 - Ac3H11_837 0.14 +1.8
120,013 - Ac3H11_837 0.14 +0.9
120,344 + Ac3H11_837 0.71 -0.0
120,345 - Ac3H11_837 0.72 +0.0
120,345 - Ac3H11_837 0.72 -2.3
120,345 - Ac3H11_837 0.72 -2.8
120,345 - Ac3H11_837 0.72 +0.3
120,399 + Ac3H11_837 0.81 -1.5
120,400 - Ac3H11_837 0.81 +0.2
120,400 - Ac3H11_837 0.81 +0.0
120,455 + -0.1
120,456 - -1.5
120,863 + Ac3H11_838 0.41 +0.2
120,863 + Ac3H11_838 0.41 -3.0
120,863 + Ac3H11_838 0.41 -0.1
120,863 + Ac3H11_838 0.41 -0.4
120,863 + Ac3H11_838 0.41 +1.7
120,864 - Ac3H11_838 0.41 -0.6
120,884 + Ac3H11_838 0.44 +1.1
120,885 - Ac3H11_838 0.44 -2.3
120,885 - Ac3H11_838 0.44 +1.1
120,885 - Ac3H11_838 0.44 +2.2
120,893 + Ac3H11_838 0.45 +0.2
120,893 + Ac3H11_838 0.45 +1.2
120,893 + Ac3H11_838 0.45 -0.2
120,893 + Ac3H11_838 0.45 +1.8
120,893 + Ac3H11_838 0.45 -0.8
120,894 - Ac3H11_838 0.45 +0.4
120,894 - Ac3H11_838 0.45 -1.8
120,894 - Ac3H11_838 0.45 +1.4
120,894 - Ac3H11_838 0.45 +1.8

Or see this region's nucleotide sequence