Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_722

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_720 and Ac3H11_721 are separated by 97 nucleotidesAc3H11_721 and Ac3H11_722 are separated by 218 nucleotidesAc3H11_722 and Ac3H11_723 are separated by 15 nucleotidesAc3H11_723 and Ac3H11_724 are separated by 79 nucleotides Ac3H11_720 - putative inner membrane protein, at 10,604 to 11,050 _720 Ac3H11_721 - Phosphate starvation-inducible protein PsiF, at 11,148 to 11,489 _721 Ac3H11_722 - Arginyl-tRNA synthetase (EC 6.1.1.19), at 11,708 to 13,429 _722 Ac3H11_723 - Cell division protein FtsN, at 13,445 to 14,107 _723 Ac3H11_724 - Periplasmic thiol:disulfide interchange protein DsbA, at 14,187 to 14,834 _724 Position (kb) 11 12 13 14Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 10.749 kb on - strand, within Ac3H11_720at 10.749 kb on - strand, within Ac3H11_720at 10.749 kb on - strand, within Ac3H11_720at 10.749 kb on - strand, within Ac3H11_720at 10.749 kb on - strand, within Ac3H11_720at 10.749 kb on - strand, within Ac3H11_720at 11.048 kb on + strandat 11.049 kb on - strandat 11.049 kb on - strandat 11.061 kb on + strandat 11.062 kb on - strandat 11.062 kb on - strandat 11.069 kb on + strandat 11.070 kb on - strandat 11.105 kb on + strandat 11.105 kb on + strandat 11.106 kb on - strandat 11.106 kb on - strandat 11.106 kb on - strandat 11.149 kb on + strandat 11.149 kb on + strandat 11.149 kb on + strandat 11.149 kb on + strandat 11.150 kb on - strandat 11.150 kb on - strandat 11.504 kb on + strandat 11.504 kb on + strandat 11.504 kb on + strandat 11.504 kb on + strandat 11.505 kb on - strandat 11.505 kb on - strandat 11.505 kb on - strandat 11.505 kb on - strandat 11.505 kb on - strandat 11.505 kb on - strandat 11.543 kb on + strandat 11.543 kb on + strandat 11.543 kb on + strandat 11.543 kb on + strandat 11.543 kb on + strandat 11.544 kb on - strandat 11.544 kb on - strandat 11.544 kb on - strandat 11.544 kb on - strandat 11.581 kb on - strandat 11.697 kb on - strandat 11.697 kb on - strandat 13.427 kb on + strandat 13.427 kb on + strandat 13.428 kb on - strandat 13.428 kb on - strandat 13.428 kb on - strandat 13.438 kb on + strandat 13.438 kb on + strandat 13.880 kb on + strand, within Ac3H11_723at 13.880 kb on + strand, within Ac3H11_723at 13.880 kb on + strand, within Ac3H11_723at 13.881 kb on - strand, within Ac3H11_723at 13.881 kb on - strand, within Ac3H11_723at 14.171 kb on + strandat 14.171 kb on + strandat 14.171 kb on + strandat 14.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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10,749 - Ac3H11_720 0.32 -1.7
10,749 - Ac3H11_720 0.32 +1.3
10,749 - Ac3H11_720 0.32 -0.3
10,749 - Ac3H11_720 0.32 +0.0
10,749 - Ac3H11_720 0.32 +0.2
10,749 - Ac3H11_720 0.32 +0.4
11,048 + -1.2
11,049 - +1.3
11,049 - -2.0
11,061 + +0.6
11,062 - -0.1
11,062 - +0.9
11,069 + +0.6
11,070 - -0.7
11,105 + -1.0
11,105 + -0.4
11,106 - -2.0
11,106 - -3.0
11,106 - -1.1
11,149 + +1.8
11,149 + -0.5
11,149 + +1.2
11,149 + -0.3
11,150 - -0.2
11,150 - -1.3
11,504 + -0.8
11,504 + -0.8
11,504 + +0.2
11,504 + +1.0
11,505 - +1.1
11,505 - -1.6
11,505 - -1.1
11,505 - +0.6
11,505 - +0.6
11,505 - -0.0
11,543 + -0.5
11,543 + -0.7
11,543 + +0.5
11,543 + +1.1
11,543 + +2.4
11,544 - +0.1
11,544 - +2.2
11,544 - -0.9
11,544 - +1.2
11,581 - -1.7
11,697 - -1.4
11,697 - -3.0
13,427 + -0.5
13,427 + -0.4
13,428 - +4.2
13,428 - +4.9
13,428 - +3.1
13,438 + -0.2
13,438 + +1.4
13,880 + Ac3H11_723 0.66 +2.9
13,880 + Ac3H11_723 0.66 +3.3
13,880 + Ac3H11_723 0.66 +4.1
13,881 - Ac3H11_723 0.66 +3.6
13,881 - Ac3H11_723 0.66 +2.8
14,171 + +0.7
14,171 + +4.5
14,171 + +1.3
14,171 + +0.3

Or see this region's nucleotide sequence