Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4123

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4122 and Ac3H11_4123 are separated by 40 nucleotidesAc3H11_4123 and Ac3H11_4124 are separated by 85 nucleotidesAc3H11_4124 and Ac3H11_4125 are separated by 207 nucleotides Ac3H11_4122 - Histone acetyltransferase HPA2 and related acetyltransferases, at 378,459 to 379,427 _4122 Ac3H11_4123 - Histone acetyltransferase HPA2 and related acetyltransferases, at 379,468 to 380,016 _4123 Ac3H11_4124 - hypothetical protein, at 380,102 to 380,293 _4124 Ac3H11_4125 - FIG000605: protein co-occurring with transport systems (COG1739), at 380,501 to 381,094 _4125 Position (kb) 379 380 381Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 378.579 kb on + strand, within Ac3H11_4122at 378.579 kb on + strand, within Ac3H11_4122at 378.580 kb on - strand, within Ac3H11_4122at 378.690 kb on + strand, within Ac3H11_4122at 378.691 kb on - strand, within Ac3H11_4122at 378.691 kb on - strand, within Ac3H11_4122at 379.029 kb on + strand, within Ac3H11_4122at 379.029 kb on + strand, within Ac3H11_4122at 379.281 kb on + strand, within Ac3H11_4122at 379.282 kb on - strand, within Ac3H11_4122at 379.282 kb on - strand, within Ac3H11_4122at 379.282 kb on - strand, within Ac3H11_4122at 379.282 kb on - strand, within Ac3H11_4122at 379.282 kb on - strand, within Ac3H11_4122at 379.335 kb on + strandat 379.335 kb on + strandat 379.335 kb on + strandat 379.335 kb on + strandat 379.335 kb on + strandat 379.335 kb on + strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.336 kb on - strandat 379.374 kb on + strandat 379.375 kb on - strandat 379.375 kb on - strandat 379.375 kb on - strandat 379.375 kb on - strandat 379.425 kb on + strandat 379.666 kb on + strand, within Ac3H11_4123at 379.666 kb on + strand, within Ac3H11_4123at 379.666 kb on + strand, within Ac3H11_4123at 379.666 kb on + strand, within Ac3H11_4123at 379.666 kb on + strand, within Ac3H11_4123at 379.667 kb on - strand, within Ac3H11_4123at 379.667 kb on - strand, within Ac3H11_4123at 379.667 kb on - strand, within Ac3H11_4123at 379.667 kb on - strand, within Ac3H11_4123at 379.667 kb on - strand, within Ac3H11_4123at 379.787 kb on - strand, within Ac3H11_4123at 379.787 kb on - strand, within Ac3H11_4123at 379.787 kb on - strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.891 kb on + strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.892 kb on - strand, within Ac3H11_4123at 379.906 kb on + strand, within Ac3H11_4123at 379.948 kb on + strand, within Ac3H11_4123at 379.948 kb on + strand, within Ac3H11_4123at 379.948 kb on + strand, within Ac3H11_4123at 379.948 kb on + strand, within Ac3H11_4123at 379.948 kb on + strand, within Ac3H11_4123at 379.949 kb on - strand, within Ac3H11_4123at 379.949 kb on - strand, within Ac3H11_4123at 379.949 kb on - strand, within Ac3H11_4123at 379.949 kb on - strand, within Ac3H11_4123at 380.348 kb on + strandat 380.348 kb on + strandat 380.374 kb on + strandat 380.374 kb on + strandat 380.374 kb on + strandat 380.374 kb on + strandat 380.647 kb on + strand, within Ac3H11_4125at 380.648 kb on - strand, within Ac3H11_4125at 380.648 kb on - strand, within Ac3H11_4125at 380.912 kb on + strand, within Ac3H11_4125at 380.912 kb on + strand, within Ac3H11_4125at 380.913 kb on - strand, within Ac3H11_4125at 380.913 kb on - strand, within Ac3H11_4125

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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378,579 + Ac3H11_4122 0.12 -1.4
378,579 + Ac3H11_4122 0.12 +1.7
378,580 - Ac3H11_4122 0.12 +1.6
378,690 + Ac3H11_4122 0.24 +1.4
378,691 - Ac3H11_4122 0.24 +0.5
378,691 - Ac3H11_4122 0.24 -1.1
379,029 + Ac3H11_4122 0.59 -0.6
379,029 + Ac3H11_4122 0.59 +1.3
379,281 + Ac3H11_4122 0.85 -0.4
379,282 - Ac3H11_4122 0.85 +0.1
379,282 - Ac3H11_4122 0.85 -1.6
379,282 - Ac3H11_4122 0.85 -1.7
379,282 - Ac3H11_4122 0.85 +1.8
379,282 - Ac3H11_4122 0.85 -2.1
379,335 + -1.3
379,335 + -0.4
379,335 + +1.4
379,335 + +2.4
379,335 + +0.3
379,335 + -1.7
379,336 - +0.7
379,336 - +1.0
379,336 - +0.4
379,336 - +4.4
379,336 - -1.6
379,336 - +2.3
379,336 - -2.0
379,336 - +1.3
379,374 + +0.7
379,375 - +0.3
379,375 - +1.6
379,375 - +1.9
379,375 - +1.2
379,425 + +1.1
379,666 + Ac3H11_4123 0.36 +0.2
379,666 + Ac3H11_4123 0.36 +3.4
379,666 + Ac3H11_4123 0.36 -3.1
379,666 + Ac3H11_4123 0.36 -0.2
379,666 + Ac3H11_4123 0.36 -0.3
379,667 - Ac3H11_4123 0.36 +1.3
379,667 - Ac3H11_4123 0.36 -1.0
379,667 - Ac3H11_4123 0.36 +0.2
379,667 - Ac3H11_4123 0.36 -1.5
379,667 - Ac3H11_4123 0.36 +1.2
379,787 - Ac3H11_4123 0.58 +1.5
379,787 - Ac3H11_4123 0.58 -1.5
379,787 - Ac3H11_4123 0.58 +0.7
379,891 + Ac3H11_4123 0.77 +1.5
379,891 + Ac3H11_4123 0.77 +2.2
379,891 + Ac3H11_4123 0.77 -0.8
379,891 + Ac3H11_4123 0.77 +0.1
379,891 + Ac3H11_4123 0.77 -2.3
379,891 + Ac3H11_4123 0.77 +2.2
379,891 + Ac3H11_4123 0.77 -0.3
379,891 + Ac3H11_4123 0.77 +1.5
379,891 + Ac3H11_4123 0.77 -0.3
379,891 + Ac3H11_4123 0.77 +2.9
379,891 + Ac3H11_4123 0.77 -1.5
379,892 - Ac3H11_4123 0.77 +1.3
379,892 - Ac3H11_4123 0.77 -0.9
379,892 - Ac3H11_4123 0.77 +0.4
379,892 - Ac3H11_4123 0.77 +0.5
379,892 - Ac3H11_4123 0.77 +0.6
379,892 - Ac3H11_4123 0.77 -0.5
379,892 - Ac3H11_4123 0.77 +0.2
379,892 - Ac3H11_4123 0.77 -2.2
379,906 + Ac3H11_4123 0.80 -0.9
379,948 + Ac3H11_4123 0.87 -1.0
379,948 + Ac3H11_4123 0.87 -0.9
379,948 + Ac3H11_4123 0.87 -1.0
379,948 + Ac3H11_4123 0.87 -0.5
379,948 + Ac3H11_4123 0.87 -1.0
379,949 - Ac3H11_4123 0.88 +1.4
379,949 - Ac3H11_4123 0.88 -0.6
379,949 - Ac3H11_4123 0.88 -0.2
379,949 - Ac3H11_4123 0.88 -1.5
380,348 + +0.2
380,348 + +0.1
380,374 + -1.8
380,374 + -0.6
380,374 + +1.9
380,374 + +3.0
380,647 + Ac3H11_4125 0.25 +0.3
380,648 - Ac3H11_4125 0.25 +3.8
380,648 - Ac3H11_4125 0.25 -2.3
380,912 + Ac3H11_4125 0.69 +2.5
380,912 + Ac3H11_4125 0.69 -0.3
380,913 - Ac3H11_4125 0.69 -3.8
380,913 - Ac3H11_4125 0.69 -1.7

Or see this region's nucleotide sequence