Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3953 and Ac3H11_3954 are separated by 34 nucleotides Ac3H11_3954 and Ac3H11_3955 are separated by 6 nucleotides
Ac3H11_3953 - D-galactarate dehydratase (EC 4.2.1.42), at 177,096 to 178,673
_3953
Ac3H11_3954 - hypothetical protein, not 6-phosphogluconolactonase, at 178,708 to 179,739
_3954
Ac3H11_3955 - TRAP-type C4-dicarboxylate transport system, large permease component, at 179,746 to 181,029
_3955
Position (kb) 178
179
180 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 178.153 kb on + strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.154 kb on - strand, within Ac3H11_3953 at 178.192 kb on + strand, within Ac3H11_3953 at 178.331 kb on - strand, within Ac3H11_3953 at 178.518 kb on + strand at 178.519 kb on - strand at 178.899 kb on + strand, within Ac3H11_3954 at 178.900 kb on - strand, within Ac3H11_3954 at 178.985 kb on + strand, within Ac3H11_3954 at 178.986 kb on - strand, within Ac3H11_3954 at 179.351 kb on + strand, within Ac3H11_3954 at 179.351 kb on + strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.579 kb on + strand, within Ac3H11_3954 at 179.580 kb on - strand, within Ac3H11_3954 at 179.580 kb on - strand, within Ac3H11_3954 at 179.683 kb on + strand at 179.683 kb on + strand at 179.683 kb on + strand at 179.683 kb on + strand at 179.684 kb on - strand at 179.684 kb on - strand at 179.720 kb on - strand at 179.720 kb on - strand at 179.792 kb on + strand at 179.792 kb on + strand at 179.792 kb on + strand at 179.793 kb on - strand at 179.793 kb on - strand at 179.793 kb on - strand at 179.793 kb on - strand at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.158 kb on + strand, within Ac3H11_3955 at 180.159 kb on - strand, within Ac3H11_3955 at 180.251 kb on + strand, within Ac3H11_3955 at 180.261 kb on - strand, within Ac3H11_3955 at 180.558 kb on - strand, within Ac3H11_3955
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 178,153 + Ac3H11_3953 0.67 -1.8 178,154 - Ac3H11_3953 0.67 -0.1 178,154 - Ac3H11_3953 0.67 +1.0 178,154 - Ac3H11_3953 0.67 +1.8 178,154 - Ac3H11_3953 0.67 +0.1 178,154 - Ac3H11_3953 0.67 -0.5 178,192 + Ac3H11_3953 0.69 -3.7 178,331 - Ac3H11_3953 0.78 +0.4 178,518 + +0.7 178,519 - -2.1 178,899 + Ac3H11_3954 0.19 +0.1 178,900 - Ac3H11_3954 0.19 +0.2 178,985 + Ac3H11_3954 0.27 -0.0 178,986 - Ac3H11_3954 0.27 -1.9 179,351 + Ac3H11_3954 0.62 -0.5 179,351 + Ac3H11_3954 0.62 -0.1 179,352 - Ac3H11_3954 0.62 -0.6 179,352 - Ac3H11_3954 0.62 -1.3 179,352 - Ac3H11_3954 0.62 +0.6 179,352 - Ac3H11_3954 0.62 -0.6 179,579 + Ac3H11_3954 0.84 -2.3 179,580 - Ac3H11_3954 0.84 -2.2 179,580 - Ac3H11_3954 0.84 +1.7 179,683 + -1.0 179,683 + -1.2 179,683 + -2.7 179,683 + +0.2 179,684 - -2.3 179,684 - -0.4 179,720 - +0.2 179,720 - -2.2 179,792 + -2.4 179,792 + -0.0 179,792 + -1.0 179,793 - +2.2 179,793 - -2.0 179,793 - +1.1 179,793 - -3.8 180,089 + Ac3H11_3955 0.27 -2.2 180,089 + Ac3H11_3955 0.27 -2.0 180,089 + Ac3H11_3955 0.27 -0.7 180,089 + Ac3H11_3955 0.27 -0.4 180,089 + Ac3H11_3955 0.27 +0.3 180,158 + Ac3H11_3955 0.32 +0.1 180,159 - Ac3H11_3955 0.32 -0.7 180,251 + Ac3H11_3955 0.39 +0.2 180,261 - Ac3H11_3955 0.40 -1.4 180,558 - Ac3H11_3955 0.63 -0.2
Or see this region's nucleotide sequence