Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3866

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3865 and Ac3H11_3866 are separated by 168 nucleotidesAc3H11_3866 and Ac3H11_3867 are separated by 29 nucleotidesAc3H11_3867 and Ac3H11_3868 overlap by 9 nucleotides Ac3H11_3865 - hypothetical protein, at 82,609 to 83,403 _3865 Ac3H11_3866 - Regulatory protein, LuxR, at 83,572 to 84,744 _3866 Ac3H11_3867 - hypothetical protein, at 84,774 to 84,926 _3867 Ac3H11_3868 - peptidase, M48 family( EC:3.4.24.- ), at 84,918 to 86,549 _3868 Position (kb) 83 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 82.597 kb on + strandat 82.597 kb on + strandat 82.597 kb on + strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.642 kb on + strandat 82.642 kb on + strandat 82.642 kb on + strandat 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.853 kb on - strand, within Ac3H11_3865at 82.946 kb on - strand, within Ac3H11_3865at 82.946 kb on - strand, within Ac3H11_3865at 82.946 kb on - strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 83.080 kb on + strand, within Ac3H11_3865at 83.080 kb on + strand, within Ac3H11_3865at 83.081 kb on - strand, within Ac3H11_3865at 83.113 kb on + strand, within Ac3H11_3865at 83.114 kb on - strand, within Ac3H11_3865at 83.114 kb on - strand, within Ac3H11_3865at 83.218 kb on + strand, within Ac3H11_3865at 83.218 kb on + strand, within Ac3H11_3865at 83.218 kb on + strand, within Ac3H11_3865at 83.218 kb on + strand, within Ac3H11_3865at 83.219 kb on - strand, within Ac3H11_3865at 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.357 kb on - strandat 83.357 kb on - strandat 83.357 kb on - strandat 83.357 kb on - strandat 83.506 kb on + strandat 83.506 kb on + strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.571 kb on + strandat 83.791 kb on + strand, within Ac3H11_3866at 83.792 kb on - strand, within Ac3H11_3866at 83.792 kb on - strand, within Ac3H11_3866at 83.895 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.933 kb on - strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.211 kb on + strand, within Ac3H11_3866at 84.211 kb on + strand, within Ac3H11_3866at 84.670 kb on + strandat 84.671 kb on - strandat 84.671 kb on - strandat 84.671 kb on - strandat 84.757 kb on + strandat 85.002 kb on + strandat 85.003 kb on - strandat 85.089 kb on + strand, within Ac3H11_3868at 85.089 kb on + strand, within Ac3H11_3868at 85.089 kb on + strand, within Ac3H11_3868at 85.089 kb on + strand, within Ac3H11_3868at 85.090 kb on - strand, within Ac3H11_3868at 85.090 kb on - strand, within Ac3H11_3868at 85.090 kb on - strand, within Ac3H11_3868at 85.195 kb on - strand, within Ac3H11_3868at 85.195 kb on - strand, within Ac3H11_3868at 85.368 kb on + strand, within Ac3H11_3868at 85.369 kb on - strand, within Ac3H11_3868

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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82,597 + -0.6
82,597 + +0.4
82,597 + +0.7
82,598 - -0.8
82,598 - +1.1
82,598 - +0.2
82,598 - +1.7
82,598 - +0.4
82,598 - -2.6
82,598 - -0.8
82,642 + -3.3
82,642 + -2.1
82,642 + -2.9
82,852 + Ac3H11_3865 0.31 +1.8
82,852 + Ac3H11_3865 0.31 +0.1
82,852 + Ac3H11_3865 0.31 -1.2
82,852 + Ac3H11_3865 0.31 +1.2
82,852 + Ac3H11_3865 0.31 -3.1
82,852 + Ac3H11_3865 0.31 -1.2
82,853 - Ac3H11_3865 0.31 +1.4
82,946 - Ac3H11_3865 0.42 +2.0
82,946 - Ac3H11_3865 0.42 -1.7
82,946 - Ac3H11_3865 0.42 +0.5
82,987 + Ac3H11_3865 0.48 -0.4
82,987 + Ac3H11_3865 0.48 -0.1
82,987 + Ac3H11_3865 0.48 -0.5
82,987 + Ac3H11_3865 0.48 -0.5
82,987 + Ac3H11_3865 0.48 -1.0
82,987 + Ac3H11_3865 0.48 +1.2
82,987 + Ac3H11_3865 0.48 +1.3
82,987 + Ac3H11_3865 0.48 -0.9
82,987 + Ac3H11_3865 0.48 -2.1
82,987 + Ac3H11_3865 0.48 +0.7
82,987 + Ac3H11_3865 0.48 -2.0
82,987 + Ac3H11_3865 0.48 +0.8
82,987 + Ac3H11_3865 0.48 +1.2
82,987 + Ac3H11_3865 0.48 +1.3
82,987 + Ac3H11_3865 0.48 +0.2
82,987 + Ac3H11_3865 0.48 -0.8
82,987 + Ac3H11_3865 0.48 -0.9
82,987 + Ac3H11_3865 0.48 +0.7
82,987 + Ac3H11_3865 0.48 -2.9
82,987 + Ac3H11_3865 0.48 -0.5
82,987 + Ac3H11_3865 0.48 -0.4
82,987 + Ac3H11_3865 0.48 -0.5
82,987 + Ac3H11_3865 0.48 +0.7
82,987 + Ac3H11_3865 0.48 -0.6
82,987 + Ac3H11_3865 0.48 +0.1
82,987 + Ac3H11_3865 0.48 +1.9
82,987 + Ac3H11_3865 0.48 +0.3
82,988 - Ac3H11_3865 0.48 +2.5
82,988 - Ac3H11_3865 0.48 +2.7
82,988 - Ac3H11_3865 0.48 -0.7
82,988 - Ac3H11_3865 0.48 +2.6
82,988 - Ac3H11_3865 0.48 +0.6
82,988 - Ac3H11_3865 0.48 +1.4
82,988 - Ac3H11_3865 0.48 -1.1
82,988 - Ac3H11_3865 0.48 +0.7
82,988 - Ac3H11_3865 0.48 -1.0
82,988 - Ac3H11_3865 0.48 -1.9
82,988 - Ac3H11_3865 0.48 +2.6
82,988 - Ac3H11_3865 0.48 +0.8
82,988 - Ac3H11_3865 0.48 -0.1
82,988 - Ac3H11_3865 0.48 -0.7
82,988 - Ac3H11_3865 0.48 -1.6
82,988 - Ac3H11_3865 0.48 +1.0
82,988 - Ac3H11_3865 0.48 +0.2
82,988 - Ac3H11_3865 0.48 -0.3
82,988 - Ac3H11_3865 0.48 -3.3
83,080 + Ac3H11_3865 0.59 -2.4
83,080 + Ac3H11_3865 0.59 -0.7
83,081 - Ac3H11_3865 0.59 +0.4
83,113 + Ac3H11_3865 0.63 -0.9
83,114 - Ac3H11_3865 0.64 +1.3
83,114 - Ac3H11_3865 0.64 +0.7
83,218 + Ac3H11_3865 0.77 +0.7
83,218 + Ac3H11_3865 0.77 +1.2
83,218 + Ac3H11_3865 0.77 +2.3
83,218 + Ac3H11_3865 0.77 +1.8
83,219 - Ac3H11_3865 0.77 +0.4
83,356 + +2.4
83,356 + +1.2
83,356 + -0.6
83,356 + +1.0
83,356 + +1.9
83,356 + +0.0
83,356 + +0.7
83,356 + -1.1
83,356 + +0.8
83,356 + +0.6
83,356 + +0.7
83,357 - -0.8
83,357 - -3.0
83,357 - -0.7
83,357 - -0.4
83,506 + -0.5
83,506 + +0.4
83,507 - +3.2
83,507 - +1.2
83,507 - -0.5
83,507 - -0.4
83,507 - +0.8
83,507 - +3.2
83,571 + -0.1
83,791 + Ac3H11_3866 0.19 +0.1
83,792 - Ac3H11_3866 0.19 +1.0
83,792 - Ac3H11_3866 0.19 +0.1
83,895 + Ac3H11_3866 0.28 -1.6
83,932 + Ac3H11_3866 0.31 -0.6
83,932 + Ac3H11_3866 0.31 +1.4
83,932 + Ac3H11_3866 0.31 -1.0
83,933 - Ac3H11_3866 0.31 -2.2
84,016 + Ac3H11_3866 0.38 -0.1
84,016 + Ac3H11_3866 0.38 +0.2
84,016 + Ac3H11_3866 0.38 +2.5
84,016 + Ac3H11_3866 0.38 -1.2
84,017 - Ac3H11_3866 0.38 +1.8
84,017 - Ac3H11_3866 0.38 -0.4
84,017 - Ac3H11_3866 0.38 -1.3
84,017 - Ac3H11_3866 0.38 +0.7
84,017 - Ac3H11_3866 0.38 -0.8
84,211 + Ac3H11_3866 0.54 +0.6
84,211 + Ac3H11_3866 0.54 +0.8
84,670 + +0.4
84,671 - -0.6
84,671 - -0.1
84,671 - -0.2
84,757 + -0.3
85,002 + +3.0
85,003 - -1.1
85,089 + Ac3H11_3868 0.10 -0.1
85,089 + Ac3H11_3868 0.10 -1.4
85,089 + Ac3H11_3868 0.10 -1.2
85,089 + Ac3H11_3868 0.10 -2.0
85,090 - Ac3H11_3868 0.11 -0.4
85,090 - Ac3H11_3868 0.11 -1.1
85,090 - Ac3H11_3868 0.11 -2.4
85,195 - Ac3H11_3868 0.17 +1.2
85,195 - Ac3H11_3868 0.17 -3.2
85,368 + Ac3H11_3868 0.28 +1.1
85,369 - Ac3H11_3868 0.28 +0.8

Or see this region's nucleotide sequence