Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3845

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3843 and Ac3H11_3844 are separated by 2 nucleotidesAc3H11_3844 and Ac3H11_3845 overlap by 35 nucleotidesAc3H11_3845 and Ac3H11_3846 overlap by 7 nucleotidesAc3H11_3846 and Ac3H11_3847 are separated by 251 nucleotides Ac3H11_3843 - Protein containing domains DUF404, DUF407, DUF403, at 62,232 to 64,901 _3843 Ac3H11_3844 - Protein containing transglutaminase-like domain, putative cysteine protease, at 64,904 to 65,872 _3844 Ac3H11_3845 - Protein containing domains DUF403, at 65,838 to 66,797 _3845 Ac3H11_3846 - Protein containing domains DUF403, at 66,791 to 66,946 _3846 Ac3H11_3847 - FIG01198578: hypothetical protein, at 67,198 to 68,340 _3847 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 64.855 kb on - strandat 64.855 kb on - strandat 64.891 kb on + strandat 64.891 kb on + strandat 64.892 kb on - strandat 64.892 kb on - strandat 64.892 kb on - strandat 64.892 kb on - strandat 64.892 kb on - strandat 64.934 kb on + strandat 64.935 kb on - strandat 64.935 kb on - strandat 64.940 kb on + strandat 64.941 kb on - strandat 65.231 kb on + strand, within Ac3H11_3844at 65.231 kb on + strand, within Ac3H11_3844at 65.231 kb on + strand, within Ac3H11_3844at 65.267 kb on + strand, within Ac3H11_3844at 65.267 kb on + strand, within Ac3H11_3844at 65.267 kb on + strand, within Ac3H11_3844at 65.267 kb on + strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.268 kb on - strand, within Ac3H11_3844at 65.298 kb on - strand, within Ac3H11_3844at 65.381 kb on + strand, within Ac3H11_3844at 65.382 kb on - strand, within Ac3H11_3844at 65.382 kb on - strand, within Ac3H11_3844at 65.382 kb on - strand, within Ac3H11_3844at 65.507 kb on + strand, within Ac3H11_3844at 65.508 kb on - strand, within Ac3H11_3844at 65.508 kb on - strand, within Ac3H11_3844at 65.508 kb on - strand, within Ac3H11_3844at 65.520 kb on - strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.687 kb on + strand, within Ac3H11_3844at 65.688 kb on - strand, within Ac3H11_3844at 65.688 kb on - strand, within Ac3H11_3844at 65.714 kb on + strand, within Ac3H11_3844at 65.715 kb on - strand, within Ac3H11_3844at 65.884 kb on - strandat 65.884 kb on - strandat 65.884 kb on - strandat 65.884 kb on - strandat 65.917 kb on + strandat 65.917 kb on + strandat 65.917 kb on + strandat 65.917 kb on + strandat 65.917 kb on + strandat 65.917 kb on + strandat 65.917 kb on + strandat 65.918 kb on - strandat 66.134 kb on - strand, within Ac3H11_3845at 66.145 kb on + strand, within Ac3H11_3845at 66.146 kb on - strand, within Ac3H11_3845at 66.190 kb on + strand, within Ac3H11_3845at 66.190 kb on + strand, within Ac3H11_3845at 66.191 kb on - strand, within Ac3H11_3845at 66.191 kb on - strand, within Ac3H11_3845at 66.191 kb on - strand, within Ac3H11_3845at 66.622 kb on + strand, within Ac3H11_3845at 66.622 kb on + strand, within Ac3H11_3845at 66.622 kb on + strand, within Ac3H11_3845at 66.622 kb on + strand, within Ac3H11_3845at 66.623 kb on - strand, within Ac3H11_3845at 66.623 kb on - strand, within Ac3H11_3845at 66.623 kb on - strand, within Ac3H11_3845at 66.754 kb on + strandat 66.755 kb on - strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.797 kb on + strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.798 kb on - strandat 66.860 kb on + strand, within Ac3H11_3846at 66.904 kb on - strand, within Ac3H11_3846at 66.946 kb on + strandat 66.946 kb on + strandat 66.946 kb on + strandat 66.946 kb on + strandat 67.024 kb on + strandat 67.024 kb on + strandat 67.025 kb on - strandat 67.053 kb on - strandat 67.162 kb on + strandat 67.162 kb on + strandat 67.163 kb on - strandat 67.196 kb on - strandat 67.365 kb on - strand, within Ac3H11_3847at 67.499 kb on + strand, within Ac3H11_3847at 67.499 kb on + strand, within Ac3H11_3847at 67.499 kb on + strand, within Ac3H11_3847at 67.500 kb on - strand, within Ac3H11_3847at 67.529 kb on + strand, within Ac3H11_3847at 67.529 kb on + strand, within Ac3H11_3847at 67.530 kb on - strand, within Ac3H11_3847at 67.530 kb on - strand, within Ac3H11_3847at 67.568 kb on + strand, within Ac3H11_3847at 67.568 kb on + strand, within Ac3H11_3847at 67.568 kb on + strand, within Ac3H11_3847at 67.569 kb on - strand, within Ac3H11_3847at 67.569 kb on - strand, within Ac3H11_3847at 67.617 kb on - strand, within Ac3H11_3847at 67.656 kb on - strand, within Ac3H11_3847at 67.667 kb on + strand, within Ac3H11_3847at 67.667 kb on + strand, within Ac3H11_3847at 67.667 kb on + strand, within Ac3H11_3847at 67.667 kb on + strand, within Ac3H11_3847at 67.668 kb on - strand, within Ac3H11_3847at 67.668 kb on - strand, within Ac3H11_3847at 67.668 kb on - strand, within Ac3H11_3847at 67.668 kb on - strand, within Ac3H11_3847at 67.691 kb on + strand, within Ac3H11_3847at 67.691 kb on + strand, within Ac3H11_3847at 67.691 kb on + strand, within Ac3H11_3847at 67.691 kb on + strand, within Ac3H11_3847at 67.692 kb on - strand, within Ac3H11_3847at 67.692 kb on - strand, within Ac3H11_3847at 67.766 kb on + strand, within Ac3H11_3847at 67.766 kb on + strand, within Ac3H11_3847at 67.767 kb on - strand, within Ac3H11_3847at 67.767 kb on - strand, within Ac3H11_3847at 67.767 kb on - strand, within Ac3H11_3847at 67.767 kb on - strand, within Ac3H11_3847

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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64,855 - +0.4
64,855 - -2.8
64,891 + -0.5
64,891 + -0.6
64,892 - -0.8
64,892 - -2.0
64,892 - -0.1
64,892 - -1.4
64,892 - +1.1
64,934 + +0.7
64,935 - -2.4
64,935 - -0.8
64,940 + -1.3
64,941 - -1.1
65,231 + Ac3H11_3844 0.34 +0.4
65,231 + Ac3H11_3844 0.34 -1.6
65,231 + Ac3H11_3844 0.34 -0.2
65,267 + Ac3H11_3844 0.37 -1.7
65,267 + Ac3H11_3844 0.37 -1.6
65,267 + Ac3H11_3844 0.37 -0.9
65,267 + Ac3H11_3844 0.37 -3.2
65,268 - Ac3H11_3844 0.38 -2.1
65,268 - Ac3H11_3844 0.38 -3.4
65,268 - Ac3H11_3844 0.38 -1.2
65,268 - Ac3H11_3844 0.38 -1.0
65,268 - Ac3H11_3844 0.38 -1.4
65,268 - Ac3H11_3844 0.38 -0.1
65,268 - Ac3H11_3844 0.38 -0.8
65,268 - Ac3H11_3844 0.38 -0.4
65,268 - Ac3H11_3844 0.38 -1.7
65,298 - Ac3H11_3844 0.41 +2.7
65,381 + Ac3H11_3844 0.49 -1.6
65,382 - Ac3H11_3844 0.49 +0.9
65,382 - Ac3H11_3844 0.49 +0.3
65,382 - Ac3H11_3844 0.49 -2.3
65,507 + Ac3H11_3844 0.62 -0.0
65,508 - Ac3H11_3844 0.62 +0.8
65,508 - Ac3H11_3844 0.62 +0.6
65,508 - Ac3H11_3844 0.62 -2.6
65,520 - Ac3H11_3844 0.64 +1.4
65,687 + Ac3H11_3844 0.81 -2.6
65,687 + Ac3H11_3844 0.81 +1.0
65,687 + Ac3H11_3844 0.81 +0.4
65,687 + Ac3H11_3844 0.81 -0.5
65,687 + Ac3H11_3844 0.81 -1.2
65,687 + Ac3H11_3844 0.81 -0.7
65,687 + Ac3H11_3844 0.81 +0.7
65,688 - Ac3H11_3844 0.81 -0.2
65,688 - Ac3H11_3844 0.81 -1.2
65,714 + Ac3H11_3844 0.84 +0.1
65,715 - Ac3H11_3844 0.84 -0.3
65,884 - -1.9
65,884 - +1.7
65,884 - +1.1
65,884 - -0.3
65,917 + -0.5
65,917 + +2.6
65,917 + +0.9
65,917 + -0.1
65,917 + -0.2
65,917 + +1.6
65,917 + -1.0
65,918 - -1.7
66,134 - Ac3H11_3845 0.31 +0.1
66,145 + Ac3H11_3845 0.32 -1.0
66,146 - Ac3H11_3845 0.32 -1.4
66,190 + Ac3H11_3845 0.37 -0.9
66,190 + Ac3H11_3845 0.37 +2.5
66,191 - Ac3H11_3845 0.37 +1.5
66,191 - Ac3H11_3845 0.37 -0.7
66,191 - Ac3H11_3845 0.37 +1.7
66,622 + Ac3H11_3845 0.82 +1.5
66,622 + Ac3H11_3845 0.82 -0.1
66,622 + Ac3H11_3845 0.82 -1.3
66,622 + Ac3H11_3845 0.82 -0.5
66,623 - Ac3H11_3845 0.82 -0.5
66,623 - Ac3H11_3845 0.82 +0.6
66,623 - Ac3H11_3845 0.82 -1.6
66,754 + +0.1
66,755 - -1.0
66,797 + -0.3
66,797 + +1.7
66,797 + -0.1
66,797 + +0.3
66,797 + +1.0
66,797 + +2.1
66,797 + -0.7
66,797 + -1.3
66,797 + -0.1
66,797 + -0.1
66,797 + +0.8
66,797 + +0.5
66,797 + -2.4
66,797 + +0.3
66,798 - +0.1
66,798 - -1.3
66,798 - -1.1
66,798 - -0.0
66,798 - -2.2
66,798 - -0.1
66,798 - -0.9
66,798 - -0.9
66,798 - -0.6
66,798 - -0.0
66,798 - +0.1
66,798 - +0.9
66,798 - +0.1
66,798 - +1.1
66,798 - -0.3
66,798 - +0.4
66,798 - -2.3
66,798 - +0.1
66,798 - -0.0
66,860 + Ac3H11_3846 0.44 +1.3
66,904 - Ac3H11_3846 0.72 -0.5
66,946 + -1.6
66,946 + +0.9
66,946 + -0.4
66,946 + +0.3
67,024 + -0.4
67,024 + -2.4
67,025 - -2.1
67,053 - -2.3
67,162 + +0.5
67,162 + +1.2
67,163 - -0.4
67,196 - +2.8
67,365 - Ac3H11_3847 0.15 -2.9
67,499 + Ac3H11_3847 0.26 -0.4
67,499 + Ac3H11_3847 0.26 +0.1
67,499 + Ac3H11_3847 0.26 +1.4
67,500 - Ac3H11_3847 0.26 -0.1
67,529 + Ac3H11_3847 0.29 +0.3
67,529 + Ac3H11_3847 0.29 +0.3
67,530 - Ac3H11_3847 0.29 -0.2
67,530 - Ac3H11_3847 0.29 +1.5
67,568 + Ac3H11_3847 0.32 +6.1
67,568 + Ac3H11_3847 0.32 -0.5
67,568 + Ac3H11_3847 0.32 -0.0
67,569 - Ac3H11_3847 0.32 -1.2
67,569 - Ac3H11_3847 0.32 -1.3
67,617 - Ac3H11_3847 0.37 -2.5
67,656 - Ac3H11_3847 0.40 +0.1
67,667 + Ac3H11_3847 0.41 -2.4
67,667 + Ac3H11_3847 0.41 -1.5
67,667 + Ac3H11_3847 0.41 -2.3
67,667 + Ac3H11_3847 0.41 -1.7
67,668 - Ac3H11_3847 0.41 -2.2
67,668 - Ac3H11_3847 0.41 -1.5
67,668 - Ac3H11_3847 0.41 +0.4
67,668 - Ac3H11_3847 0.41 -0.2
67,691 + Ac3H11_3847 0.43 -1.9
67,691 + Ac3H11_3847 0.43 +2.6
67,691 + Ac3H11_3847 0.43 +1.2
67,691 + Ac3H11_3847 0.43 -1.5
67,692 - Ac3H11_3847 0.43 +1.2
67,692 - Ac3H11_3847 0.43 -0.5
67,766 + Ac3H11_3847 0.50 +0.1
67,766 + Ac3H11_3847 0.50 -0.5
67,767 - Ac3H11_3847 0.50 +1.4
67,767 - Ac3H11_3847 0.50 +1.6
67,767 - Ac3H11_3847 0.50 +1.1
67,767 - Ac3H11_3847 0.50 -0.6

Or see this region's nucleotide sequence