Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3780 and Ac3H11_3781 are separated by 118 nucleotides Ac3H11_3781 and Ac3H11_3782 are separated by 4 nucleotides Ac3H11_3782 and Ac3H11_3783 are separated by 43 nucleotides Ac3H11_3783 and Ac3H11_3784 are separated by 194 nucleotides Ac3H11_3784 and Ac3H11_3785 overlap by 13 nucleotides
Ac3H11_3780 - Phage (Mu-like) virion morphogenesis protein, at 28,630 to 29,907
_3780
Ac3H11_3781 - hypothetical protein, at 30,026 to 30,481
_3781
Ac3H11_3782 - hypothetical protein, at 30,486 to 30,686
_3782
Ac3H11_3783 - Phage protein, at 30,730 to 31,311
_3783
Ac3H11_3784 - hypothetical protein, at 31,506 to 31,637
_3784
Ac3H11_3785 - Nucleoside-diphosphate-sugar epimerases, at 31,625 to 32,608
_3785
Position (kb)
30
31 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 29.833 kb on + strand at 29.834 kb on - strand at 29.834 kb on - strand at 29.953 kb on + strand at 30.072 kb on - strand, within Ac3H11_3781 at 30.228 kb on - strand, within Ac3H11_3781 at 30.456 kb on + strand at 30.456 kb on + strand at 30.457 kb on - strand at 30.538 kb on - strand, within Ac3H11_3782 at 30.595 kb on - strand, within Ac3H11_3782 at 30.603 kb on + strand, within Ac3H11_3782 at 30.603 kb on + strand, within Ac3H11_3782 at 30.603 kb on + strand, within Ac3H11_3782 at 30.604 kb on - strand, within Ac3H11_3782 at 30.604 kb on - strand, within Ac3H11_3782 at 30.615 kb on + strand, within Ac3H11_3782 at 30.616 kb on - strand, within Ac3H11_3782 at 30.616 kb on - strand, within Ac3H11_3782 at 30.616 kb on - strand, within Ac3H11_3782 at 30.616 kb on - strand, within Ac3H11_3782 at 30.616 kb on - strand, within Ac3H11_3782 at 30.616 kb on - strand, within Ac3H11_3782 at 30.679 kb on - strand at 30.742 kb on + strand at 30.857 kb on + strand, within Ac3H11_3783 at 30.858 kb on - strand, within Ac3H11_3783 at 31.082 kb on - strand, within Ac3H11_3783 at 31.082 kb on - strand, within Ac3H11_3783 at 31.082 kb on - strand, within Ac3H11_3783 at 31.111 kb on - strand, within Ac3H11_3783 at 31.207 kb on + strand, within Ac3H11_3783 at 31.207 kb on + strand, within Ac3H11_3783 at 31.207 kb on + strand, within Ac3H11_3783 at 31.207 kb on + strand, within Ac3H11_3783 at 31.207 kb on + strand, within Ac3H11_3783 at 31.207 kb on + strand, within Ac3H11_3783 at 31.208 kb on - strand, within Ac3H11_3783 at 31.208 kb on - strand, within Ac3H11_3783 at 31.208 kb on - strand, within Ac3H11_3783 at 31.283 kb on + strand at 31.284 kb on - strand at 31.284 kb on - strand at 31.369 kb on - strand at 31.369 kb on - strand at 31.444 kb on + strand at 31.445 kb on - strand at 31.445 kb on - strand at 31.445 kb on - strand at 31.467 kb on + strand at 31.467 kb on + strand at 31.626 kb on + strand at 31.649 kb on + strand at 31.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 29,833 + -0.2 29,834 - +0.5 29,834 - +0.7 29,953 + -2.0 30,072 - Ac3H11_3781 0.10 +1.7 30,228 - Ac3H11_3781 0.44 -2.5 30,456 + +1.5 30,456 + +0.3 30,457 - -3.7 30,538 - Ac3H11_3782 0.26 -1.3 30,595 - Ac3H11_3782 0.54 -0.2 30,603 + Ac3H11_3782 0.58 -1.0 30,603 + Ac3H11_3782 0.58 +0.3 30,603 + Ac3H11_3782 0.58 +0.9 30,604 - Ac3H11_3782 0.59 -1.8 30,604 - Ac3H11_3782 0.59 +1.0 30,615 + Ac3H11_3782 0.64 +2.5 30,616 - Ac3H11_3782 0.65 -1.9 30,616 - Ac3H11_3782 0.65 +0.9 30,616 - Ac3H11_3782 0.65 -3.0 30,616 - Ac3H11_3782 0.65 +1.6 30,616 - Ac3H11_3782 0.65 +1.0 30,616 - Ac3H11_3782 0.65 -1.4 30,679 - -0.2 30,742 + +0.9 30,857 + Ac3H11_3783 0.22 +2.4 30,858 - Ac3H11_3783 0.22 -1.2 31,082 - Ac3H11_3783 0.60 +0.9 31,082 - Ac3H11_3783 0.60 -0.5 31,082 - Ac3H11_3783 0.60 -0.2 31,111 - Ac3H11_3783 0.65 +0.4 31,207 + Ac3H11_3783 0.82 +0.2 31,207 + Ac3H11_3783 0.82 +1.0 31,207 + Ac3H11_3783 0.82 +0.9 31,207 + Ac3H11_3783 0.82 -3.0 31,207 + Ac3H11_3783 0.82 -0.1 31,207 + Ac3H11_3783 0.82 +0.5 31,208 - Ac3H11_3783 0.82 +0.5 31,208 - Ac3H11_3783 0.82 +0.3 31,208 - Ac3H11_3783 0.82 +2.1 31,283 + -3.0 31,284 - -2.1 31,284 - -1.0 31,369 - -0.8 31,369 - +0.3 31,444 + -0.4 31,445 - +3.6 31,445 - -1.3 31,445 - -2.5 31,467 + -0.6 31,467 + +3.3 31,626 + -0.4 31,649 + -1.9 31,650 - -0.7
Or see this region's nucleotide sequence