Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3726 and Ac3H11_3727 are separated by 86 nucleotides Ac3H11_3727 and Ac3H11_3728 are separated by 29 nucleotides Ac3H11_3728 and Ac3H11_3729 overlap by 4 nucleotides
Ac3H11_3726 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 86,363 to 87,361
_3726
Ac3H11_3727 - Creatinine amidohydrolase (EC 3.5.2.10), at 87,448 to 88,311
_3727
Ac3H11_3728 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 88,341 to 88,805
_3728
Ac3H11_3729 - Cytosine deaminase (EC 3.5.4.1), at 88,802 to 90,130
_3729
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 86.463 kb on + strand, within Ac3H11_3726 at 86.463 kb on + strand, within Ac3H11_3726 at 86.464 kb on - strand, within Ac3H11_3726 at 86.563 kb on - strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.901 kb on + strand, within Ac3H11_3726 at 86.902 kb on - strand, within Ac3H11_3726 at 87.203 kb on - strand, within Ac3H11_3726 at 87.217 kb on - strand, within Ac3H11_3726 at 87.243 kb on + strand, within Ac3H11_3726 at 87.258 kb on + strand, within Ac3H11_3726 at 87.258 kb on + strand, within Ac3H11_3726 at 87.258 kb on + strand, within Ac3H11_3726 at 87.259 kb on - strand, within Ac3H11_3726 at 87.259 kb on - strand, within Ac3H11_3726 at 87.259 kb on - strand, within Ac3H11_3726 at 87.259 kb on - strand, within Ac3H11_3726 at 87.367 kb on + strand at 87.367 kb on + strand at 87.367 kb on + strand at 87.367 kb on + strand at 87.716 kb on + strand, within Ac3H11_3727 at 87.717 kb on - strand, within Ac3H11_3727 at 87.981 kb on - strand, within Ac3H11_3727 at 88.076 kb on + strand, within Ac3H11_3727 at 88.076 kb on + strand, within Ac3H11_3727 at 88.077 kb on - strand, within Ac3H11_3727 at 88.077 kb on - strand, within Ac3H11_3727 at 88.298 kb on + strand at 88.298 kb on + strand at 88.298 kb on + strand at 88.299 kb on - strand at 88.299 kb on - strand at 88.357 kb on + strand at 88.357 kb on + strand at 88.357 kb on + strand at 88.501 kb on + strand, within Ac3H11_3728 at 88.501 kb on + strand, within Ac3H11_3728 at 88.502 kb on - strand, within Ac3H11_3728 at 88.502 kb on - strand, within Ac3H11_3728 at 88.576 kb on + strand, within Ac3H11_3728 at 88.576 kb on + strand, within Ac3H11_3728 at 88.576 kb on + strand, within Ac3H11_3728 at 88.577 kb on - strand, within Ac3H11_3728 at 88.577 kb on - strand, within Ac3H11_3728 at 88.577 kb on - strand, within Ac3H11_3728 at 88.577 kb on - strand, within Ac3H11_3728 at 88.727 kb on - strand, within Ac3H11_3728 at 89.169 kb on - strand, within Ac3H11_3729 at 89.169 kb on - strand, within Ac3H11_3729
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 86,463 + Ac3H11_3726 0.10 -0.7 86,463 + Ac3H11_3726 0.10 +0.7 86,464 - Ac3H11_3726 0.10 +1.1 86,563 - Ac3H11_3726 0.20 -0.6 86,637 + Ac3H11_3726 0.27 -1.1 86,637 + Ac3H11_3726 0.27 +1.1 86,637 + Ac3H11_3726 0.27 -2.2 86,637 + Ac3H11_3726 0.27 +0.5 86,637 + Ac3H11_3726 0.27 +0.3 86,637 + Ac3H11_3726 0.27 -0.8 86,901 + Ac3H11_3726 0.54 +1.6 86,902 - Ac3H11_3726 0.54 +1.0 87,203 - Ac3H11_3726 0.84 -1.8 87,217 - Ac3H11_3726 0.85 +0.1 87,243 + Ac3H11_3726 0.88 +0.3 87,258 + Ac3H11_3726 0.90 +0.7 87,258 + Ac3H11_3726 0.90 +1.1 87,258 + Ac3H11_3726 0.90 -0.8 87,259 - Ac3H11_3726 0.90 +3.5 87,259 - Ac3H11_3726 0.90 +0.5 87,259 - Ac3H11_3726 0.90 +0.1 87,259 - Ac3H11_3726 0.90 -0.1 87,367 + +0.0 87,367 + +1.4 87,367 + +2.0 87,367 + -1.8 87,716 + Ac3H11_3727 0.31 -0.6 87,717 - Ac3H11_3727 0.31 -0.7 87,981 - Ac3H11_3727 0.62 -0.7 88,076 + Ac3H11_3727 0.73 +0.6 88,076 + Ac3H11_3727 0.73 -0.5 88,077 - Ac3H11_3727 0.73 -2.0 88,077 - Ac3H11_3727 0.73 +1.2 88,298 + -2.8 88,298 + +0.8 88,298 + +0.4 88,299 - -1.7 88,299 - +0.1 88,357 + +1.4 88,357 + -0.5 88,357 + -0.6 88,501 + Ac3H11_3728 0.34 +1.7 88,501 + Ac3H11_3728 0.34 +1.4 88,502 - Ac3H11_3728 0.35 +0.0 88,502 - Ac3H11_3728 0.35 -0.9 88,576 + Ac3H11_3728 0.51 -1.5 88,576 + Ac3H11_3728 0.51 +2.2 88,576 + Ac3H11_3728 0.51 -0.9 88,577 - Ac3H11_3728 0.51 +1.9 88,577 - Ac3H11_3728 0.51 +1.7 88,577 - Ac3H11_3728 0.51 +0.3 88,577 - Ac3H11_3728 0.51 -0.1 88,727 - Ac3H11_3728 0.83 -1.2 89,169 - Ac3H11_3729 0.28 +2.0 89,169 - Ac3H11_3729 0.28 -0.9
Or see this region's nucleotide sequence