Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3648 and Ac3H11_3453 are separated by 30 nucleotides Ac3H11_3453 and Ac3H11_3454 are separated by 58 nucleotides Ac3H11_3454 and Ac3H11_3455 are separated by 41 nucleotides
Ac3H11_3648 - tRNA-Gln-TTG, at 2,836 to 2,909
_3648
Ac3H11_3453 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 2,940 to 3,779
_3453
Ac3H11_3454 - Outer membrane lipoprotein LolB, at 3,838 to 4,326
_3454
Ac3H11_3455 - FOG: TPR repeat, at 4,368 to 6,128
_3455
Position (kb) 3
4
5 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3.819 kb on + strand at 3.820 kb on - strand at 3.820 kb on - strand at 3.820 kb on - strand at 4.506 kb on + strand at 4.507 kb on - strand at 4.507 kb on - strand at 4.507 kb on - strand at 4.507 kb on - strand at 4.513 kb on - strand at 4.513 kb on - strand at 4.531 kb on + strand at 4.531 kb on + strand at 4.531 kb on + strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.694 kb on - strand, within Ac3H11_3455 at 4.698 kb on + strand, within Ac3H11_3455 at 4.699 kb on - strand, within Ac3H11_3455 at 4.699 kb on - strand, within Ac3H11_3455 at 4.699 kb on - strand, within Ac3H11_3455 at 4.709 kb on - strand, within Ac3H11_3455 at 4.709 kb on - strand, within Ac3H11_3455 at 4.709 kb on - strand, within Ac3H11_3455 at 4.721 kb on - strand, within Ac3H11_3455 at 4.721 kb on - strand, within Ac3H11_3455 at 4.808 kb on - strand, within Ac3H11_3455 at 4.808 kb on - strand, within Ac3H11_3455 at 4.808 kb on - strand, within Ac3H11_3455 at 4.808 kb on - strand, within Ac3H11_3455 at 4.808 kb on - strand, within Ac3H11_3455 at 4.862 kb on - strand, within Ac3H11_3455 at 4.862 kb on - strand, within Ac3H11_3455 at 4.862 kb on - strand, within Ac3H11_3455 at 4.874 kb on - strand, within Ac3H11_3455 at 4.874 kb on - strand, within Ac3H11_3455 at 4.874 kb on - strand, within Ac3H11_3455 at 4.874 kb on - strand, within Ac3H11_3455 at 5.108 kb on - strand, within Ac3H11_3455 at 5.108 kb on - strand, within Ac3H11_3455 at 5.108 kb on - strand, within Ac3H11_3455 at 5.117 kb on - strand, within Ac3H11_3455 at 5.151 kb on - strand, within Ac3H11_3455
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 3,819 + -0.4 3,820 - +0.6 3,820 - -1.6 3,820 - -1.4 4,506 + +0.6 4,507 - -3.1 4,507 - -1.3 4,507 - -2.4 4,507 - -1.8 4,513 - -3.4 4,513 - -0.0 4,531 + +0.6 4,531 + +0.2 4,531 + -0.0 4,532 - -0.6 4,532 - -1.3 4,532 - -2.2 4,532 - -2.3 4,532 - -1.0 4,532 - -3.2 4,694 - Ac3H11_3455 0.19 -1.9 4,698 + Ac3H11_3455 0.19 +1.4 4,699 - Ac3H11_3455 0.19 -1.4 4,699 - Ac3H11_3455 0.19 -3.5 4,699 - Ac3H11_3455 0.19 -3.0 4,709 - Ac3H11_3455 0.19 -1.5 4,709 - Ac3H11_3455 0.19 -2.7 4,709 - Ac3H11_3455 0.19 -2.3 4,721 - Ac3H11_3455 0.20 -2.0 4,721 - Ac3H11_3455 0.20 -1.2 4,808 - Ac3H11_3455 0.25 -1.6 4,808 - Ac3H11_3455 0.25 -3.6 4,808 - Ac3H11_3455 0.25 -2.2 4,808 - Ac3H11_3455 0.25 +0.2 4,808 - Ac3H11_3455 0.25 -2.0 4,862 - Ac3H11_3455 0.28 -1.1 4,862 - Ac3H11_3455 0.28 -1.5 4,862 - Ac3H11_3455 0.28 -2.6 4,874 - Ac3H11_3455 0.29 -2.4 4,874 - Ac3H11_3455 0.29 -1.6 4,874 - Ac3H11_3455 0.29 -2.4 4,874 - Ac3H11_3455 0.29 -1.4 5,108 - Ac3H11_3455 0.42 -3.3 5,108 - Ac3H11_3455 0.42 -1.9 5,108 - Ac3H11_3455 0.42 +1.0 5,117 - Ac3H11_3455 0.43 -0.1 5,151 - Ac3H11_3455 0.44 -4.0
Or see this region's nucleotide sequence