Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3278

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3277 and Ac3H11_3278 are separated by 83 nucleotidesAc3H11_3278 and Ac3H11_3279 are separated by 111 nucleotides Ac3H11_3277 - LysR family transcriptional regulator PA2758, at 9,146 to 10,087 _3277 Ac3H11_3278 - hypothetical protein, at 10,171 to 10,974 _3278 Ac3H11_3279 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 11,086 to 12,066 _3279 Position (kb) 10 11Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 9.501 kb on - strand, within Ac3H11_3277at 9.501 kb on - strand, within Ac3H11_3277at 10.103 kb on - strandat 10.149 kb on + strandat 10.484 kb on + strand, within Ac3H11_3278at 10.484 kb on + strand, within Ac3H11_3278at 10.484 kb on + strand, within Ac3H11_3278at 10.484 kb on + strand, within Ac3H11_3278at 10.485 kb on - strand, within Ac3H11_3278at 10.517 kb on + strand, within Ac3H11_3278at 10.518 kb on - strand, within Ac3H11_3278at 10.659 kb on - strand, within Ac3H11_3278at 10.659 kb on - strand, within Ac3H11_3278at 10.659 kb on - strand, within Ac3H11_3278at 11.083 kb on - strandat 11.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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9,501 - Ac3H11_3277 0.38 -2.4
9,501 - Ac3H11_3277 0.38 -3.1
10,103 - -0.3
10,149 + +1.5
10,484 + Ac3H11_3278 0.39 +2.4
10,484 + Ac3H11_3278 0.39 +1.5
10,484 + Ac3H11_3278 0.39 -2.5
10,484 + Ac3H11_3278 0.39 -0.3
10,485 - Ac3H11_3278 0.39 +0.1
10,517 + Ac3H11_3278 0.43 -0.6
10,518 - Ac3H11_3278 0.43 +0.7
10,659 - Ac3H11_3278 0.61 +0.0
10,659 - Ac3H11_3278 0.61 -0.2
10,659 - Ac3H11_3278 0.61 -1.2
11,083 - -0.4
11,132 - +2.4

Or see this region's nucleotide sequence