Experiment: LB, pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2696 and Ac3H11_2697 are separated by 27 nucleotides Ac3H11_2697 and Ac3H11_2698 overlap by 4 nucleotides Ac3H11_2698 and Ac3H11_2699 are separated by 105 nucleotides
Ac3H11_2696 - hypothetical protein, at 991,945 to 993,243
_2696
Ac3H11_2697 - hypothetical protein, at 993,271 to 993,387
_2697
Ac3H11_2698 - hypothetical protein, at 993,384 to 994,802
_2698
Ac3H11_2699 - Transcriptional regulator, MarR family, at 994,908 to 996,443
_2699
Position (kb) 993
994
995 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 992.537 kb on + strand, within Ac3H11_2696 at 992.538 kb on - strand, within Ac3H11_2696 at 992.786 kb on + strand, within Ac3H11_2696 at 992.786 kb on + strand, within Ac3H11_2696 at 992.787 kb on - strand, within Ac3H11_2696 at 992.787 kb on - strand, within Ac3H11_2696 at 992.918 kb on + strand, within Ac3H11_2696 at 992.918 kb on + strand, within Ac3H11_2696 at 993.086 kb on + strand, within Ac3H11_2696 at 993.086 kb on + strand, within Ac3H11_2696 at 993.086 kb on + strand, within Ac3H11_2696 at 993.086 kb on + strand, within Ac3H11_2696 at 993.087 kb on - strand, within Ac3H11_2696 at 993.087 kb on - strand, within Ac3H11_2696 at 993.087 kb on - strand, within Ac3H11_2696 at 993.087 kb on - strand, within Ac3H11_2696 at 993.087 kb on - strand, within Ac3H11_2696 at 993.368 kb on - strand, within Ac3H11_2697 at 993.385 kb on + strand at 993.386 kb on - strand at 993.473 kb on + strand at 993.504 kb on + strand at 993.504 kb on + strand at 993.504 kb on + strand at 993.504 kb on + strand at 993.505 kb on - strand at 993.505 kb on - strand at 993.505 kb on - strand at 993.505 kb on - strand at 993.505 kb on - strand at 993.505 kb on - strand at 993.660 kb on + strand, within Ac3H11_2698 at 993.730 kb on - strand, within Ac3H11_2698 at 994.027 kb on + strand, within Ac3H11_2698 at 994.027 kb on + strand, within Ac3H11_2698 at 994.027 kb on + strand, within Ac3H11_2698 at 994.028 kb on - strand, within Ac3H11_2698 at 994.087 kb on + strand, within Ac3H11_2698 at 994.087 kb on + strand, within Ac3H11_2698 at 994.087 kb on + strand, within Ac3H11_2698 at 994.366 kb on + strand, within Ac3H11_2698 at 994.366 kb on + strand, within Ac3H11_2698 at 994.366 kb on + strand, within Ac3H11_2698 at 994.367 kb on - strand, within Ac3H11_2698 at 994.367 kb on - strand, within Ac3H11_2698 at 994.367 kb on - strand, within Ac3H11_2698 at 994.367 kb on - strand, within Ac3H11_2698 at 994.424 kb on - strand, within Ac3H11_2698 at 994.444 kb on + strand, within Ac3H11_2698 at 994.445 kb on - strand, within Ac3H11_2698 at 994.445 kb on - strand, within Ac3H11_2698 at 994.602 kb on - strand, within Ac3H11_2698 at 994.853 kb on + strand at 994.853 kb on + strand at 994.853 kb on + strand at 994.854 kb on - strand at 994.854 kb on - strand at 994.872 kb on + strand at 994.872 kb on + strand at 994.950 kb on + strand at 994.951 kb on - strand at 994.951 kb on - strand at 995.208 kb on + strand, within Ac3H11_2699 at 995.315 kb on + strand, within Ac3H11_2699 at 995.332 kb on + strand, within Ac3H11_2699 at 995.353 kb on + strand, within Ac3H11_2699 at 995.440 kb on + strand, within Ac3H11_2699 at 995.441 kb on - strand, within Ac3H11_2699 at 995.484 kb on + strand, within Ac3H11_2699 at 995.484 kb on + strand, within Ac3H11_2699 at 995.484 kb on + strand, within Ac3H11_2699 at 995.484 kb on + strand, within Ac3H11_2699 at 995.484 kb on + strand, within Ac3H11_2699 at 995.485 kb on - strand, within Ac3H11_2699 at 995.485 kb on - strand, within Ac3H11_2699
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH10 remove 992,537 + Ac3H11_2696 0.46 +0.8 992,538 - Ac3H11_2696 0.46 -1.0 992,786 + Ac3H11_2696 0.65 -2.3 992,786 + Ac3H11_2696 0.65 -1.6 992,787 - Ac3H11_2696 0.65 -0.5 992,787 - Ac3H11_2696 0.65 +2.0 992,918 + Ac3H11_2696 0.75 +0.1 992,918 + Ac3H11_2696 0.75 -0.2 993,086 + Ac3H11_2696 0.88 +0.8 993,086 + Ac3H11_2696 0.88 +0.6 993,086 + Ac3H11_2696 0.88 +0.0 993,086 + Ac3H11_2696 0.88 +2.0 993,087 - Ac3H11_2696 0.88 -0.2 993,087 - Ac3H11_2696 0.88 -0.1 993,087 - Ac3H11_2696 0.88 -1.6 993,087 - Ac3H11_2696 0.88 +1.6 993,087 - Ac3H11_2696 0.88 -3.3 993,368 - Ac3H11_2697 0.83 -0.3 993,385 + +1.0 993,386 - +2.0 993,473 + +2.5 993,504 + -0.1 993,504 + +0.6 993,504 + +1.0 993,504 + +1.1 993,505 - +1.8 993,505 - +0.3 993,505 - -1.2 993,505 - -0.0 993,505 - -0.7 993,505 - +0.7 993,660 + Ac3H11_2698 0.19 -0.4 993,730 - Ac3H11_2698 0.24 +1.5 994,027 + Ac3H11_2698 0.45 -0.6 994,027 + Ac3H11_2698 0.45 +1.6 994,027 + Ac3H11_2698 0.45 +2.6 994,028 - Ac3H11_2698 0.45 -0.6 994,087 + Ac3H11_2698 0.50 -3.3 994,087 + Ac3H11_2698 0.50 -0.6 994,087 + Ac3H11_2698 0.50 -0.4 994,366 + Ac3H11_2698 0.69 +0.8 994,366 + Ac3H11_2698 0.69 -0.9 994,366 + Ac3H11_2698 0.69 +2.1 994,367 - Ac3H11_2698 0.69 +0.5 994,367 - Ac3H11_2698 0.69 -2.0 994,367 - Ac3H11_2698 0.69 -2.1 994,367 - Ac3H11_2698 0.69 +1.1 994,424 - Ac3H11_2698 0.73 -0.4 994,444 + Ac3H11_2698 0.75 -0.7 994,445 - Ac3H11_2698 0.75 -0.6 994,445 - Ac3H11_2698 0.75 -0.5 994,602 - Ac3H11_2698 0.86 -0.7 994,853 + -0.6 994,853 + +0.6 994,853 + -2.1 994,854 - -1.0 994,854 - +0.7 994,872 + -0.1 994,872 + -0.3 994,950 + -0.5 994,951 - +0.8 994,951 - +0.3 995,208 + Ac3H11_2699 0.20 +1.6 995,315 + Ac3H11_2699 0.26 -3.1 995,332 + Ac3H11_2699 0.28 +1.9 995,353 + Ac3H11_2699 0.29 -0.5 995,440 + Ac3H11_2699 0.35 -2.7 995,441 - Ac3H11_2699 0.35 +3.0 995,484 + Ac3H11_2699 0.38 +0.2 995,484 + Ac3H11_2699 0.38 +1.1 995,484 + Ac3H11_2699 0.38 -0.8 995,484 + Ac3H11_2699 0.38 +0.3 995,484 + Ac3H11_2699 0.38 +0.0 995,485 - Ac3H11_2699 0.38 +0.4 995,485 - Ac3H11_2699 0.38 +2.7
Or see this region's nucleotide sequence