Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1854

Experiment: LB, pH10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1852 and Ac3H11_1853 are separated by 63 nucleotidesAc3H11_1853 and Ac3H11_1854 overlap by 4 nucleotidesAc3H11_1854 and Ac3H11_1855 overlap by 1 nucleotides Ac3H11_1852 - Transcriptional regulator, AsnC family, at 55,964 to 56,446 _1852 Ac3H11_1853 - putative ABC transporter ATP-binding protein, at 56,510 to 57,409 _1853 Ac3H11_1854 - hypothetical protein, at 57,406 to 58,266 _1854 Ac3H11_1855 - hypothetical protein, at 58,266 to 59,267 _1855 Position (kb) 57 58 59Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 56.558 kb on + strandat 56.558 kb on + strandat 56.558 kb on + strandat 56.558 kb on + strandat 56.558 kb on + strandat 56.558 kb on + strandat 56.558 kb on + strandat 56.558 kb on + strandat 56.558 kb on + strandat 56.558 kb on + strandat 56.558 kb on + strandat 56.558 kb on + strandat 56.558 kb on + strandat 56.558 kb on + strandat 56.559 kb on - strandat 56.559 kb on - strandat 56.559 kb on - strandat 56.559 kb on - strandat 56.559 kb on - strandat 56.597 kb on + strandat 56.597 kb on + strandat 56.597 kb on + strandat 56.597 kb on + strandat 56.597 kb on + strandat 56.597 kb on + strandat 56.597 kb on + strandat 56.597 kb on + strandat 56.597 kb on + strandat 56.597 kb on + strandat 56.597 kb on + strandat 56.598 kb on - strandat 56.598 kb on - strandat 56.598 kb on - strandat 56.598 kb on - strandat 56.598 kb on - strandat 56.738 kb on + strand, within Ac3H11_1853at 56.738 kb on + strand, within Ac3H11_1853at 56.738 kb on + strand, within Ac3H11_1853at 56.738 kb on + strand, within Ac3H11_1853at 56.738 kb on + strand, within Ac3H11_1853at 56.738 kb on + strand, within Ac3H11_1853at 56.738 kb on + strand, within Ac3H11_1853at 56.738 kb on + strand, within Ac3H11_1853at 56.738 kb on + strand, within Ac3H11_1853at 56.738 kb on + strand, within Ac3H11_1853at 56.738 kb on + strand, within Ac3H11_1853at 56.739 kb on - strand, within Ac3H11_1853at 56.739 kb on - strand, within Ac3H11_1853at 56.739 kb on - strand, within Ac3H11_1853at 56.739 kb on - strand, within Ac3H11_1853at 56.739 kb on - strand, within Ac3H11_1853at 56.739 kb on - strand, within Ac3H11_1853at 56.739 kb on - strand, within Ac3H11_1853at 56.739 kb on - strand, within Ac3H11_1853at 56.739 kb on - strand, within Ac3H11_1853at 56.739 kb on - strand, within Ac3H11_1853at 56.739 kb on - strand, within Ac3H11_1853at 56.810 kb on + strand, within Ac3H11_1853at 56.810 kb on + strand, within Ac3H11_1853at 56.811 kb on - strand, within Ac3H11_1853at 56.843 kb on + strand, within Ac3H11_1853at 56.844 kb on - strand, within Ac3H11_1853at 57.218 kb on + strand, within Ac3H11_1853at 57.248 kb on + strand, within Ac3H11_1853at 57.248 kb on + strand, within Ac3H11_1853at 57.248 kb on + strand, within Ac3H11_1853at 57.248 kb on + strand, within Ac3H11_1853at 57.249 kb on - strand, within Ac3H11_1853at 57.249 kb on - strand, within Ac3H11_1853at 57.249 kb on - strand, within Ac3H11_1853at 57.249 kb on - strand, within Ac3H11_1853at 57.249 kb on - strand, within Ac3H11_1853at 57.249 kb on - strand, within Ac3H11_1853at 57.249 kb on - strand, within Ac3H11_1853at 57.249 kb on - strand, within Ac3H11_1853at 57.286 kb on - strand, within Ac3H11_1853at 57.323 kb on + strandat 57.323 kb on + strandat 57.323 kb on + strandat 57.323 kb on + strandat 57.323 kb on + strandat 57.323 kb on + strandat 57.323 kb on + strandat 57.323 kb on + strandat 57.324 kb on - strandat 57.324 kb on - strandat 57.324 kb on - strandat 57.324 kb on - strandat 57.324 kb on - strandat 57.324 kb on - strandat 57.324 kb on - strandat 57.324 kb on - strandat 57.324 kb on - strandat 57.523 kb on + strand, within Ac3H11_1854at 57.523 kb on + strand, within Ac3H11_1854at 57.523 kb on + strand, within Ac3H11_1854at 57.523 kb on + strand, within Ac3H11_1854at 57.524 kb on - strand, within Ac3H11_1854at 57.524 kb on - strand, within Ac3H11_1854at 57.524 kb on - strand, within Ac3H11_1854at 57.524 kb on - strand, within Ac3H11_1854at 57.556 kb on + strand, within Ac3H11_1854at 57.556 kb on + strand, within Ac3H11_1854at 57.556 kb on + strand, within Ac3H11_1854at 57.556 kb on + strand, within Ac3H11_1854at 57.557 kb on - strand, within Ac3H11_1854at 57.557 kb on - strand, within Ac3H11_1854at 57.557 kb on - strand, within Ac3H11_1854at 57.629 kb on - strand, within Ac3H11_1854at 57.629 kb on - strand, within Ac3H11_1854at 57.631 kb on + strand, within Ac3H11_1854at 57.631 kb on + strand, within Ac3H11_1854at 57.631 kb on + strand, within Ac3H11_1854at 57.631 kb on + strand, within Ac3H11_1854at 57.631 kb on + strand, within Ac3H11_1854at 57.631 kb on + strand, within Ac3H11_1854at 57.631 kb on + strand, within Ac3H11_1854at 57.631 kb on + strand, within Ac3H11_1854at 57.631 kb on + strand, within Ac3H11_1854at 57.632 kb on - strand, within Ac3H11_1854at 57.632 kb on - strand, within Ac3H11_1854at 57.632 kb on - strand, within Ac3H11_1854at 57.632 kb on - strand, within Ac3H11_1854at 57.632 kb on - strand, within Ac3H11_1854at 57.646 kb on + strand, within Ac3H11_1854at 57.646 kb on + strand, within Ac3H11_1854at 57.647 kb on - strand, within Ac3H11_1854at 57.647 kb on - strand, within Ac3H11_1854at 57.647 kb on - strand, within Ac3H11_1854at 57.647 kb on - strand, within Ac3H11_1854at 57.647 kb on - strand, within Ac3H11_1854at 57.647 kb on - strand, within Ac3H11_1854at 57.676 kb on + strand, within Ac3H11_1854at 57.677 kb on - strand, within Ac3H11_1854at 57.677 kb on - strand, within Ac3H11_1854at 57.827 kb on + strand, within Ac3H11_1854at 57.895 kb on + strand, within Ac3H11_1854at 57.895 kb on + strand, within Ac3H11_1854at 57.895 kb on + strand, within Ac3H11_1854at 57.895 kb on + strand, within Ac3H11_1854at 57.895 kb on + strand, within Ac3H11_1854at 57.895 kb on + strand, within Ac3H11_1854at 57.895 kb on + strand, within Ac3H11_1854at 57.895 kb on + strand, within Ac3H11_1854at 57.895 kb on + strand, within Ac3H11_1854at 57.895 kb on + strand, within Ac3H11_1854at 57.895 kb on + strand, within Ac3H11_1854at 57.896 kb on - strand, within Ac3H11_1854at 57.896 kb on - strand, within Ac3H11_1854at 57.896 kb on - strand, within Ac3H11_1854at 57.896 kb on - strand, within Ac3H11_1854at 57.896 kb on - strand, within Ac3H11_1854at 57.896 kb on - strand, within Ac3H11_1854at 57.896 kb on - strand, within Ac3H11_1854at 57.896 kb on - strand, within Ac3H11_1854at 57.906 kb on + strand, within Ac3H11_1854at 57.907 kb on - strand, within Ac3H11_1854at 57.907 kb on - strand, within Ac3H11_1854at 57.907 kb on - strand, within Ac3H11_1854at 58.234 kb on + strandat 58.234 kb on + strandat 58.235 kb on - strandat 58.416 kb on + strand, within Ac3H11_1855at 58.416 kb on + strand, within Ac3H11_1855at 58.416 kb on + strand, within Ac3H11_1855at 58.416 kb on + strand, within Ac3H11_1855at 58.416 kb on + strand, within Ac3H11_1855at 58.416 kb on + strand, within Ac3H11_1855at 58.416 kb on + strand, within Ac3H11_1855at 58.417 kb on - strand, within Ac3H11_1855at 58.417 kb on - strand, within Ac3H11_1855at 58.417 kb on - strand, within Ac3H11_1855at 58.417 kb on - strand, within Ac3H11_1855at 58.417 kb on - strand, within Ac3H11_1855at 58.417 kb on - strand, within Ac3H11_1855at 58.417 kb on - strand, within Ac3H11_1855at 58.492 kb on - strand, within Ac3H11_1855at 58.492 kb on - strand, within Ac3H11_1855at 58.492 kb on - strand, within Ac3H11_1855at 58.859 kb on + strand, within Ac3H11_1855at 58.859 kb on + strand, within Ac3H11_1855at 58.860 kb on - strand, within Ac3H11_1855at 58.860 kb on - strand, within Ac3H11_1855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
remove
56,558 + -1.6
56,558 + -0.1
56,558 + +1.6
56,558 + -0.2
56,558 + -0.5
56,558 + -0.7
56,558 + -0.7
56,558 + -0.3
56,558 + +0.2
56,558 + -0.9
56,558 + +0.3
56,558 + +0.2
56,558 + -0.6
56,558 + -2.2
56,559 - -0.7
56,559 - +1.7
56,559 - +1.6
56,559 - -1.5
56,559 - +1.7
56,597 + +0.1
56,597 + -1.8
56,597 + -2.0
56,597 + -0.2
56,597 + +0.2
56,597 + +3.1
56,597 + +2.0
56,597 + +0.1
56,597 + -1.1
56,597 + +1.7
56,597 + -0.4
56,598 - +2.7
56,598 - +1.5
56,598 - +1.4
56,598 - -0.7
56,598 - -2.9
56,738 + Ac3H11_1853 0.25 +0.7
56,738 + Ac3H11_1853 0.25 -1.9
56,738 + Ac3H11_1853 0.25 -2.2
56,738 + Ac3H11_1853 0.25 +0.1
56,738 + Ac3H11_1853 0.25 -0.4
56,738 + Ac3H11_1853 0.25 -0.4
56,738 + Ac3H11_1853 0.25 -0.8
56,738 + Ac3H11_1853 0.25 +1.4
56,738 + Ac3H11_1853 0.25 +0.1
56,738 + Ac3H11_1853 0.25 -2.7
56,738 + Ac3H11_1853 0.25 +0.5
56,739 - Ac3H11_1853 0.25 -0.7
56,739 - Ac3H11_1853 0.25 -1.2
56,739 - Ac3H11_1853 0.25 -1.5
56,739 - Ac3H11_1853 0.25 +0.4
56,739 - Ac3H11_1853 0.25 +1.5
56,739 - Ac3H11_1853 0.25 +1.7
56,739 - Ac3H11_1853 0.25 +0.6
56,739 - Ac3H11_1853 0.25 +2.6
56,739 - Ac3H11_1853 0.25 -2.4
56,739 - Ac3H11_1853 0.25 -1.6
56,739 - Ac3H11_1853 0.25 -0.3
56,810 + Ac3H11_1853 0.33 -1.9
56,810 + Ac3H11_1853 0.33 -1.3
56,811 - Ac3H11_1853 0.33 -2.5
56,843 + Ac3H11_1853 0.37 +1.1
56,844 - Ac3H11_1853 0.37 +1.2
57,218 + Ac3H11_1853 0.79 +0.6
57,248 + Ac3H11_1853 0.82 -0.2
57,248 + Ac3H11_1853 0.82 +0.6
57,248 + Ac3H11_1853 0.82 +1.3
57,248 + Ac3H11_1853 0.82 -0.9
57,249 - Ac3H11_1853 0.82 +4.8
57,249 - Ac3H11_1853 0.82 -0.6
57,249 - Ac3H11_1853 0.82 +0.4
57,249 - Ac3H11_1853 0.82 -0.2
57,249 - Ac3H11_1853 0.82 +0.8
57,249 - Ac3H11_1853 0.82 +0.8
57,249 - Ac3H11_1853 0.82 +0.6
57,249 - Ac3H11_1853 0.82 -0.1
57,286 - Ac3H11_1853 0.86 +0.7
57,323 + +0.6
57,323 + -1.0
57,323 + +0.6
57,323 + -1.7
57,323 + -0.5
57,323 + -1.1
57,323 + +0.1
57,323 + -0.2
57,324 - -1.9
57,324 - -0.6
57,324 - +1.5
57,324 - -0.7
57,324 - +0.4
57,324 - -0.7
57,324 - +0.6
57,324 - +0.3
57,324 - -0.5
57,523 + Ac3H11_1854 0.14 -1.5
57,523 + Ac3H11_1854 0.14 +3.6
57,523 + Ac3H11_1854 0.14 -3.0
57,523 + Ac3H11_1854 0.14 -3.8
57,524 - Ac3H11_1854 0.14 -0.8
57,524 - Ac3H11_1854 0.14 -0.4
57,524 - Ac3H11_1854 0.14 -2.2
57,524 - Ac3H11_1854 0.14 -1.4
57,556 + Ac3H11_1854 0.17 +1.0
57,556 + Ac3H11_1854 0.17 -0.7
57,556 + Ac3H11_1854 0.17 -1.9
57,556 + Ac3H11_1854 0.17 +0.5
57,557 - Ac3H11_1854 0.18 -1.0
57,557 - Ac3H11_1854 0.18 -0.8
57,557 - Ac3H11_1854 0.18 -1.6
57,629 - Ac3H11_1854 0.26 +1.2
57,629 - Ac3H11_1854 0.26 -0.1
57,631 + Ac3H11_1854 0.26 +2.7
57,631 + Ac3H11_1854 0.26 +3.5
57,631 + Ac3H11_1854 0.26 -0.9
57,631 + Ac3H11_1854 0.26 +1.5
57,631 + Ac3H11_1854 0.26 -1.7
57,631 + Ac3H11_1854 0.26 +0.5
57,631 + Ac3H11_1854 0.26 -2.0
57,631 + Ac3H11_1854 0.26 -1.1
57,631 + Ac3H11_1854 0.26 +0.1
57,632 - Ac3H11_1854 0.26 -0.2
57,632 - Ac3H11_1854 0.26 -0.8
57,632 - Ac3H11_1854 0.26 -1.7
57,632 - Ac3H11_1854 0.26 -0.7
57,632 - Ac3H11_1854 0.26 -0.2
57,646 + Ac3H11_1854 0.28 -0.2
57,646 + Ac3H11_1854 0.28 -2.0
57,647 - Ac3H11_1854 0.28 -0.4
57,647 - Ac3H11_1854 0.28 -0.7
57,647 - Ac3H11_1854 0.28 -2.3
57,647 - Ac3H11_1854 0.28 -0.4
57,647 - Ac3H11_1854 0.28 -0.4
57,647 - Ac3H11_1854 0.28 -0.2
57,676 + Ac3H11_1854 0.31 +1.0
57,677 - Ac3H11_1854 0.31 +3.0
57,677 - Ac3H11_1854 0.31 -1.7
57,827 + Ac3H11_1854 0.49 -0.9
57,895 + Ac3H11_1854 0.57 -2.4
57,895 + Ac3H11_1854 0.57 -0.7
57,895 + Ac3H11_1854 0.57 -1.6
57,895 + Ac3H11_1854 0.57 -0.3
57,895 + Ac3H11_1854 0.57 +2.2
57,895 + Ac3H11_1854 0.57 +1.3
57,895 + Ac3H11_1854 0.57 +0.1
57,895 + Ac3H11_1854 0.57 -0.1
57,895 + Ac3H11_1854 0.57 -0.6
57,895 + Ac3H11_1854 0.57 +0.3
57,895 + Ac3H11_1854 0.57 +1.1
57,896 - Ac3H11_1854 0.57 -0.8
57,896 - Ac3H11_1854 0.57 -0.6
57,896 - Ac3H11_1854 0.57 -0.8
57,896 - Ac3H11_1854 0.57 +0.2
57,896 - Ac3H11_1854 0.57 -0.3
57,896 - Ac3H11_1854 0.57 +2.4
57,896 - Ac3H11_1854 0.57 -1.4
57,896 - Ac3H11_1854 0.57 -0.2
57,906 + Ac3H11_1854 0.58 -0.8
57,907 - Ac3H11_1854 0.58 +0.5
57,907 - Ac3H11_1854 0.58 -0.5
57,907 - Ac3H11_1854 0.58 -1.3
58,234 + +0.6
58,234 + -0.6
58,235 - -1.5
58,416 + Ac3H11_1855 0.15 +3.7
58,416 + Ac3H11_1855 0.15 +1.9
58,416 + Ac3H11_1855 0.15 +0.2
58,416 + Ac3H11_1855 0.15 -2.0
58,416 + Ac3H11_1855 0.15 -0.0
58,416 + Ac3H11_1855 0.15 -2.2
58,416 + Ac3H11_1855 0.15 +1.6
58,417 - Ac3H11_1855 0.15 +0.5
58,417 - Ac3H11_1855 0.15 -0.8
58,417 - Ac3H11_1855 0.15 +0.9
58,417 - Ac3H11_1855 0.15 -1.2
58,417 - Ac3H11_1855 0.15 +0.6
58,417 - Ac3H11_1855 0.15 +1.6
58,417 - Ac3H11_1855 0.15 -0.2
58,492 - Ac3H11_1855 0.23 +2.4
58,492 - Ac3H11_1855 0.23 +0.2
58,492 - Ac3H11_1855 0.23 -1.1
58,859 + Ac3H11_1855 0.59 -0.4
58,859 + Ac3H11_1855 0.59 -0.7
58,860 - Ac3H11_1855 0.59 +1.5
58,860 - Ac3H11_1855 0.59 -0.8

Or see this region's nucleotide sequence