Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1662

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1660 and Ac3H11_1661 are separated by 43 nucleotidesAc3H11_1661 and Ac3H11_1662 are separated by 243 nucleotidesAc3H11_1662 and Ac3H11_1663 are separated by 55 nucleotides Ac3H11_1660 - ATP-dependent DNA helicase UvrD/PcrA, at 254,331 to 256,784 _1660 Ac3H11_1661 - hypothetical protein, at 256,828 to 257,535 _1661 Ac3H11_1662 - GMP reductase (EC 1.7.1.7), at 257,779 to 258,756 _1662 Ac3H11_1663 - putative esterase, at 258,812 to 259,693 _1663 Position (kb) 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 257.218 kb on + strand, within Ac3H11_1661at 257.218 kb on + strand, within Ac3H11_1661at 257.218 kb on + strand, within Ac3H11_1661at 257.218 kb on + strand, within Ac3H11_1661at 257.218 kb on + strand, within Ac3H11_1661at 257.218 kb on + strand, within Ac3H11_1661at 257.219 kb on - strand, within Ac3H11_1661at 257.219 kb on - strand, within Ac3H11_1661at 257.219 kb on - strand, within Ac3H11_1661at 257.219 kb on - strand, within Ac3H11_1661at 257.572 kb on + strandat 257.572 kb on + strandat 257.584 kb on + strandat 257.584 kb on + strandat 257.584 kb on + strandat 257.584 kb on + strandat 257.585 kb on - strandat 257.587 kb on - strandat 257.608 kb on + strandat 257.609 kb on - strandat 257.794 kb on + strandat 257.959 kb on + strand, within Ac3H11_1662at 257.959 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.966 kb on - strand, within Ac3H11_1662at 257.966 kb on - strand, within Ac3H11_1662at 257.966 kb on - strand, within Ac3H11_1662at 258.031 kb on + strand, within Ac3H11_1662at 258.031 kb on + strand, within Ac3H11_1662at 258.031 kb on + strand, within Ac3H11_1662at 258.032 kb on - strand, within Ac3H11_1662at 258.032 kb on - strand, within Ac3H11_1662at 258.068 kb on - strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.113 kb on - strand, within Ac3H11_1662at 258.113 kb on - strand, within Ac3H11_1662at 258.113 kb on - strand, within Ac3H11_1662at 258.113 kb on - strand, within Ac3H11_1662at 258.113 kb on - strand, within Ac3H11_1662at 258.523 kb on + strand, within Ac3H11_1662at 258.524 kb on - strand, within Ac3H11_1662at 258.524 kb on - strand, within Ac3H11_1662at 258.532 kb on + strand, within Ac3H11_1662at 258.532 kb on + strand, within Ac3H11_1662at 258.533 kb on - strand, within Ac3H11_1662at 258.533 kb on - strand, within Ac3H11_1662at 258.536 kb on - strand, within Ac3H11_1662at 258.536 kb on - strand, within Ac3H11_1662at 258.536 kb on - strand, within Ac3H11_1662at 258.568 kb on + strand, within Ac3H11_1662at 258.568 kb on + strand, within Ac3H11_1662at 258.568 kb on + strand, within Ac3H11_1662at 258.569 kb on - strand, within Ac3H11_1662at 258.569 kb on - strand, within Ac3H11_1662at 258.569 kb on - strand, within Ac3H11_1662at 258.569 kb on - strand, within Ac3H11_1662at 258.569 kb on - strand, within Ac3H11_1662at 258.569 kb on - strand, within Ac3H11_1662at 258.667 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.710 kb on - strandat 258.710 kb on - strandat 258.710 kb on - strandat 258.710 kb on - strandat 258.710 kb on - strandat 258.754 kb on + strandat 258.754 kb on + strandat 258.755 kb on - strandat 258.755 kb on - strandat 258.755 kb on - strandat 258.755 kb on - strandat 258.755 kb on - strandat 258.813 kb on + strandat 258.813 kb on + strandat 258.813 kb on + strandat 259.003 kb on - strand, within Ac3H11_1663at 259.368 kb on + strand, within Ac3H11_1663at 259.368 kb on + strand, within Ac3H11_1663at 259.368 kb on + strand, within Ac3H11_1663at 259.368 kb on + strand, within Ac3H11_1663at 259.369 kb on - strand, within Ac3H11_1663at 259.435 kb on + strand, within Ac3H11_1663at 259.435 kb on + strand, within Ac3H11_1663at 259.436 kb on - strand, within Ac3H11_1663at 259.436 kb on - strand, within Ac3H11_1663at 259.436 kb on - strand, within Ac3H11_1663at 259.452 kb on + strand, within Ac3H11_1663at 259.545 kb on + strand, within Ac3H11_1663at 259.546 kb on - strand, within Ac3H11_1663at 259.614 kb on + strandat 259.614 kb on + strandat 259.614 kb on + strandat 259.615 kb on - strandat 259.615 kb on - strandat 259.615 kb on - strandat 259.615 kb on - strandat 259.650 kb on + strandat 259.650 kb on + strandat 259.650 kb on + strandat 259.650 kb on + strandat 259.650 kb on + strandat 259.650 kb on + strandat 259.650 kb on + strandat 259.651 kb on - strandat 259.651 kb on - strandat 259.651 kb on - strandat 259.651 kb on - strandat 259.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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257,218 + Ac3H11_1661 0.55 -1.5
257,218 + Ac3H11_1661 0.55 +1.0
257,218 + Ac3H11_1661 0.55 +0.4
257,218 + Ac3H11_1661 0.55 -0.1
257,218 + Ac3H11_1661 0.55 +0.8
257,218 + Ac3H11_1661 0.55 +0.4
257,219 - Ac3H11_1661 0.55 -1.0
257,219 - Ac3H11_1661 0.55 -1.1
257,219 - Ac3H11_1661 0.55 +0.3
257,219 - Ac3H11_1661 0.55 +0.7
257,572 + +1.4
257,572 + +0.1
257,584 + +0.4
257,584 + +1.9
257,584 + +0.4
257,584 + -2.1
257,585 - +0.8
257,587 - -3.2
257,608 + +0.7
257,609 - +1.0
257,794 + -2.3
257,959 + Ac3H11_1662 0.18 +0.4
257,959 + Ac3H11_1662 0.18 -0.4
257,965 + Ac3H11_1662 0.19 -1.3
257,965 + Ac3H11_1662 0.19 +0.5
257,965 + Ac3H11_1662 0.19 +1.2
257,965 + Ac3H11_1662 0.19 +1.4
257,965 + Ac3H11_1662 0.19 -0.3
257,965 + Ac3H11_1662 0.19 -0.3
257,965 + Ac3H11_1662 0.19 -1.7
257,966 - Ac3H11_1662 0.19 +2.4
257,966 - Ac3H11_1662 0.19 +0.5
257,966 - Ac3H11_1662 0.19 +2.3
258,031 + Ac3H11_1662 0.26 +1.1
258,031 + Ac3H11_1662 0.26 -2.3
258,031 + Ac3H11_1662 0.26 -1.0
258,032 - Ac3H11_1662 0.26 +0.3
258,032 - Ac3H11_1662 0.26 -1.4
258,068 - Ac3H11_1662 0.30 -0.3
258,112 + Ac3H11_1662 0.34 -1.6
258,112 + Ac3H11_1662 0.34 +0.1
258,112 + Ac3H11_1662 0.34 -0.1
258,112 + Ac3H11_1662 0.34 +0.2
258,112 + Ac3H11_1662 0.34 +1.5
258,112 + Ac3H11_1662 0.34 -0.0
258,112 + Ac3H11_1662 0.34 -2.3
258,112 + Ac3H11_1662 0.34 +0.6
258,112 + Ac3H11_1662 0.34 -0.7
258,113 - Ac3H11_1662 0.34 -1.7
258,113 - Ac3H11_1662 0.34 +0.7
258,113 - Ac3H11_1662 0.34 -0.5
258,113 - Ac3H11_1662 0.34 +0.2
258,113 - Ac3H11_1662 0.34 +0.3
258,523 + Ac3H11_1662 0.76 -0.3
258,524 - Ac3H11_1662 0.76 -0.1
258,524 - Ac3H11_1662 0.76 +0.2
258,532 + Ac3H11_1662 0.77 -2.2
258,532 + Ac3H11_1662 0.77 -2.7
258,533 - Ac3H11_1662 0.77 +1.2
258,533 - Ac3H11_1662 0.77 -1.0
258,536 - Ac3H11_1662 0.77 -0.7
258,536 - Ac3H11_1662 0.77 +0.0
258,536 - Ac3H11_1662 0.77 -1.0
258,568 + Ac3H11_1662 0.81 -1.4
258,568 + Ac3H11_1662 0.81 -1.3
258,568 + Ac3H11_1662 0.81 -0.2
258,569 - Ac3H11_1662 0.81 +1.5
258,569 - Ac3H11_1662 0.81 -2.8
258,569 - Ac3H11_1662 0.81 +0.8
258,569 - Ac3H11_1662 0.81 +0.0
258,569 - Ac3H11_1662 0.81 +1.1
258,569 - Ac3H11_1662 0.81 +1.3
258,667 + -0.3
258,709 + +2.0
258,709 + -0.2
258,709 + +1.6
258,709 + -0.6
258,709 + +0.8
258,709 + -1.7
258,709 + -0.2
258,709 + +0.7
258,710 - -1.4
258,710 - -2.6
258,710 - -3.0
258,710 - -0.3
258,710 - -2.2
258,754 + -2.2
258,754 + -0.4
258,755 - +0.1
258,755 - -1.2
258,755 - +0.7
258,755 - -1.0
258,755 - +0.3
258,813 + -0.3
258,813 + +0.1
258,813 + +0.1
259,003 - Ac3H11_1663 0.22 +3.2
259,368 + Ac3H11_1663 0.63 +1.0
259,368 + Ac3H11_1663 0.63 -2.2
259,368 + Ac3H11_1663 0.63 +0.7
259,368 + Ac3H11_1663 0.63 +0.1
259,369 - Ac3H11_1663 0.63 +2.0
259,435 + Ac3H11_1663 0.71 +1.9
259,435 + Ac3H11_1663 0.71 -1.1
259,436 - Ac3H11_1663 0.71 +3.2
259,436 - Ac3H11_1663 0.71 +0.1
259,436 - Ac3H11_1663 0.71 +0.2
259,452 + Ac3H11_1663 0.73 -1.7
259,545 + Ac3H11_1663 0.83 +1.1
259,546 - Ac3H11_1663 0.83 +0.7
259,614 + -0.7
259,614 + +0.9
259,614 + +2.3
259,615 - +0.5
259,615 - -1.5
259,615 - +0.1
259,615 - +0.5
259,650 + -0.5
259,650 + -3.0
259,650 + -1.2
259,650 + +0.1
259,650 + -2.9
259,650 + +0.3
259,650 + -0.6
259,651 - -1.7
259,651 - -0.1
259,651 - -0.9
259,651 - -0.6
259,651 - +2.7

Or see this region's nucleotide sequence