Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1161

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1159 and Ac3H11_1160 overlap by 4 nucleotidesAc3H11_1160 and Ac3H11_1161 are separated by 93 nucleotidesAc3H11_1161 and Ac3H11_1162 overlap by 48 nucleotides Ac3H11_1159 - Sensory histidine kinase QseC, at 111,548 to 112,969 _1159 Ac3H11_1160 - probable two-component system response regulator, at 112,966 to 113,631 _1160 Ac3H11_1161 - hypothetical protein, at 113,725 to 113,877 _1161 Ac3H11_1162 - putative peptidase, at 113,830 to 115,740 _1162 Position (kb) 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 112.830 kb on + strandat 112.830 kb on + strandat 112.830 kb on + strandat 112.831 kb on - strandat 112.845 kb on + strandat 112.982 kb on + strandat 114.258 kb on + strand, within Ac3H11_1162at 114.277 kb on + strand, within Ac3H11_1162at 114.477 kb on + strand, within Ac3H11_1162at 114.477 kb on + strand, within Ac3H11_1162at 114.478 kb on - strand, within Ac3H11_1162at 114.824 kb on - strand, within Ac3H11_1162

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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112,830 + -3.2
112,830 + +2.9
112,830 + +1.9
112,831 - -1.0
112,845 + +0.3
112,982 + +1.1
114,258 + Ac3H11_1162 0.22 +0.2
114,277 + Ac3H11_1162 0.23 +1.9
114,477 + Ac3H11_1162 0.34 +1.2
114,477 + Ac3H11_1162 0.34 +0.3
114,478 - Ac3H11_1162 0.34 -0.2
114,824 - Ac3H11_1162 0.52 +0.1

Or see this region's nucleotide sequence