Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1117

Experiment: LB, pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1116 and Ac3H11_1117 are separated by 233 nucleotidesAc3H11_1117 and Ac3H11_1118 are separated by 85 nucleotidesAc3H11_1118 and Ac3H11_1119 are separated by 138 nucleotides Ac3H11_1116 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 58,472 to 59,584 _1116 Ac3H11_1117 - Guanine deaminase (EC 3.5.4.3), at 59,818 to 61,092 _1117 Ac3H11_1118 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 61,178 to 61,750 _1118 Ac3H11_1119 - hypothetical protein, at 61,889 to 62,170 _1119 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 58.856 kb on + strand, within Ac3H11_1116at 58.857 kb on - strand, within Ac3H11_1116at 58.895 kb on + strand, within Ac3H11_1116at 58.898 kb on + strand, within Ac3H11_1116at 58.898 kb on + strand, within Ac3H11_1116at 58.898 kb on + strand, within Ac3H11_1116at 58.898 kb on + strand, within Ac3H11_1116at 58.899 kb on - strand, within Ac3H11_1116at 59.204 kb on + strand, within Ac3H11_1116at 59.273 kb on + strand, within Ac3H11_1116at 59.274 kb on - strand, within Ac3H11_1116at 59.276 kb on + strand, within Ac3H11_1116at 59.277 kb on - strand, within Ac3H11_1116at 59.277 kb on - strand, within Ac3H11_1116at 59.631 kb on - strandat 59.631 kb on - strandat 59.631 kb on - strandat 59.634 kb on - strandat 59.634 kb on - strandat 59.634 kb on - strandat 59.634 kb on - strandat 59.640 kb on - strandat 59.640 kb on - strandat 59.697 kb on + strandat 59.737 kb on - strandat 59.744 kb on - strandat 59.757 kb on + strandat 59.757 kb on + strandat 59.759 kb on + strandat 59.759 kb on + strandat 59.760 kb on - strandat 59.760 kb on - strandat 59.760 kb on - strandat 59.801 kb on + strandat 59.801 kb on + strandat 59.801 kb on + strandat 59.801 kb on + strandat 59.802 kb on - strandat 59.802 kb on - strandat 59.848 kb on + strandat 59.849 kb on - strandat 59.849 kb on - strandat 59.849 kb on - strandat 59.849 kb on - strandat 59.849 kb on - strandat 59.849 kb on - strandat 59.849 kb on - strandat 59.849 kb on - strandat 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.073 kb on + strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.074 kb on - strand, within Ac3H11_1117at 60.112 kb on + strand, within Ac3H11_1117at 60.113 kb on - strand, within Ac3H11_1117at 60.113 kb on - strand, within Ac3H11_1117at 60.370 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.532 kb on + strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.533 kb on - strand, within Ac3H11_1117at 60.544 kb on + strand, within Ac3H11_1117at 60.544 kb on + strand, within Ac3H11_1117at 60.545 kb on - strand, within Ac3H11_1117at 60.545 kb on - strand, within Ac3H11_1117at 60.580 kb on + strand, within Ac3H11_1117at 60.581 kb on - strand, within Ac3H11_1117at 60.581 kb on - strand, within Ac3H11_1117at 60.581 kb on - strand, within Ac3H11_1117at 60.694 kb on + strand, within Ac3H11_1117at 60.694 kb on + strand, within Ac3H11_1117at 60.694 kb on + strand, within Ac3H11_1117at 60.695 kb on - strand, within Ac3H11_1117at 60.695 kb on - strand, within Ac3H11_1117at 60.695 kb on - strand, within Ac3H11_1117at 60.695 kb on - strand, within Ac3H11_1117at 60.790 kb on + strand, within Ac3H11_1117at 60.790 kb on + strand, within Ac3H11_1117at 60.790 kb on + strand, within Ac3H11_1117at 60.790 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.793 kb on + strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.794 kb on - strand, within Ac3H11_1117at 60.848 kb on + strand, within Ac3H11_1117at 60.848 kb on + strand, within Ac3H11_1117at 60.848 kb on + strand, within Ac3H11_1117at 60.848 kb on + strand, within Ac3H11_1117at 60.849 kb on - strand, within Ac3H11_1117at 60.849 kb on - strand, within Ac3H11_1117at 60.849 kb on - strand, within Ac3H11_1117at 61.177 kb on + strandat 61.177 kb on + strandat 61.177 kb on + strandat 61.177 kb on + strandat 61.790 kb on + strandat 61.790 kb on + strandat 61.791 kb on - strandat 61.791 kb on - strandat 61.838 kb on + strandat 61.839 kb on - strandat 61.918 kb on + strand, within Ac3H11_1119at 61.918 kb on + strand, within Ac3H11_1119at 61.919 kb on - strand, within Ac3H11_1119at 61.921 kb on + strand, within Ac3H11_1119at 61.921 kb on + strand, within Ac3H11_1119at 61.921 kb on + strand, within Ac3H11_1119at 61.922 kb on - strand, within Ac3H11_1119at 61.922 kb on - strand, within Ac3H11_1119at 61.922 kb on - strand, within Ac3H11_1119at 61.973 kb on + strand, within Ac3H11_1119at 61.973 kb on + strand, within Ac3H11_1119at 61.974 kb on - strand, within Ac3H11_1119at 61.974 kb on - strand, within Ac3H11_1119at 61.974 kb on - strand, within Ac3H11_1119at 61.974 kb on - strand, within Ac3H11_1119at 62.067 kb on - strand, within Ac3H11_1119

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH10
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58,856 + Ac3H11_1116 0.35 +0.3
58,857 - Ac3H11_1116 0.35 +0.0
58,895 + Ac3H11_1116 0.38 +3.1
58,898 + Ac3H11_1116 0.38 -1.0
58,898 + Ac3H11_1116 0.38 -1.7
58,898 + Ac3H11_1116 0.38 +0.4
58,898 + Ac3H11_1116 0.38 +0.4
58,899 - Ac3H11_1116 0.38 +1.3
59,204 + Ac3H11_1116 0.66 +0.3
59,273 + Ac3H11_1116 0.72 +0.8
59,274 - Ac3H11_1116 0.72 +1.1
59,276 + Ac3H11_1116 0.72 -1.3
59,277 - Ac3H11_1116 0.72 -0.1
59,277 - Ac3H11_1116 0.72 -1.1
59,631 - -0.7
59,631 - -1.1
59,631 - +0.0
59,634 - +0.8
59,634 - -0.6
59,634 - +0.4
59,634 - -0.5
59,640 - +0.7
59,640 - -1.7
59,697 + -0.3
59,737 - +0.4
59,744 - -0.6
59,757 + -1.6
59,757 + -1.3
59,759 + -1.5
59,759 + -2.1
59,760 - +1.3
59,760 - +0.5
59,760 - +0.3
59,801 + -0.7
59,801 + +0.5
59,801 + +1.3
59,801 + +1.6
59,802 - -0.0
59,802 - +0.8
59,848 + -0.1
59,849 - -0.6
59,849 - +0.6
59,849 - +0.2
59,849 - -0.1
59,849 - +0.4
59,849 - -0.8
59,849 - -2.0
59,849 - -0.3
60,073 + Ac3H11_1117 0.20 -1.5
60,073 + Ac3H11_1117 0.20 -0.1
60,073 + Ac3H11_1117 0.20 +1.3
60,073 + Ac3H11_1117 0.20 -1.1
60,073 + Ac3H11_1117 0.20 -1.2
60,073 + Ac3H11_1117 0.20 -1.7
60,073 + Ac3H11_1117 0.20 -3.1
60,073 + Ac3H11_1117 0.20 -3.3
60,074 - Ac3H11_1117 0.20 -0.0
60,074 - Ac3H11_1117 0.20 +1.0
60,074 - Ac3H11_1117 0.20 +2.2
60,074 - Ac3H11_1117 0.20 +0.0
60,074 - Ac3H11_1117 0.20 -1.4
60,074 - Ac3H11_1117 0.20 -1.4
60,074 - Ac3H11_1117 0.20 +0.9
60,112 + Ac3H11_1117 0.23 +3.8
60,113 - Ac3H11_1117 0.23 +0.1
60,113 - Ac3H11_1117 0.23 +0.7
60,370 + Ac3H11_1117 0.43 +0.6
60,532 + Ac3H11_1117 0.56 +1.6
60,532 + Ac3H11_1117 0.56 +1.0
60,532 + Ac3H11_1117 0.56 -0.1
60,532 + Ac3H11_1117 0.56 -0.7
60,532 + Ac3H11_1117 0.56 -1.7
60,533 - Ac3H11_1117 0.56 -0.2
60,533 - Ac3H11_1117 0.56 -2.2
60,533 - Ac3H11_1117 0.56 +1.0
60,533 - Ac3H11_1117 0.56 -1.5
60,533 - Ac3H11_1117 0.56 -1.2
60,544 + Ac3H11_1117 0.57 -1.3
60,544 + Ac3H11_1117 0.57 -1.2
60,545 - Ac3H11_1117 0.57 +0.8
60,545 - Ac3H11_1117 0.57 +1.8
60,580 + Ac3H11_1117 0.60 -1.9
60,581 - Ac3H11_1117 0.60 -2.9
60,581 - Ac3H11_1117 0.60 +1.0
60,581 - Ac3H11_1117 0.60 +0.3
60,694 + Ac3H11_1117 0.69 -1.0
60,694 + Ac3H11_1117 0.69 -1.8
60,694 + Ac3H11_1117 0.69 -0.6
60,695 - Ac3H11_1117 0.69 +0.4
60,695 - Ac3H11_1117 0.69 +0.4
60,695 - Ac3H11_1117 0.69 +1.5
60,695 - Ac3H11_1117 0.69 +0.3
60,790 + Ac3H11_1117 0.76 +1.0
60,790 + Ac3H11_1117 0.76 -1.7
60,790 + Ac3H11_1117 0.76 -0.9
60,790 + Ac3H11_1117 0.76 -0.1
60,793 + Ac3H11_1117 0.76 +1.1
60,793 + Ac3H11_1117 0.76 +0.6
60,793 + Ac3H11_1117 0.76 +0.7
60,793 + Ac3H11_1117 0.76 -0.6
60,793 + Ac3H11_1117 0.76 +0.3
60,793 + Ac3H11_1117 0.76 -1.3
60,793 + Ac3H11_1117 0.76 +0.6
60,793 + Ac3H11_1117 0.76 -1.3
60,794 - Ac3H11_1117 0.77 -1.2
60,794 - Ac3H11_1117 0.77 +0.2
60,794 - Ac3H11_1117 0.77 +0.0
60,794 - Ac3H11_1117 0.77 +1.0
60,794 - Ac3H11_1117 0.77 -0.2
60,794 - Ac3H11_1117 0.77 +0.9
60,794 - Ac3H11_1117 0.77 -1.4
60,794 - Ac3H11_1117 0.77 +0.4
60,794 - Ac3H11_1117 0.77 -2.3
60,794 - Ac3H11_1117 0.77 +0.4
60,794 - Ac3H11_1117 0.77 -1.7
60,794 - Ac3H11_1117 0.77 -0.6
60,848 + Ac3H11_1117 0.81 +0.3
60,848 + Ac3H11_1117 0.81 +0.8
60,848 + Ac3H11_1117 0.81 +0.1
60,848 + Ac3H11_1117 0.81 -2.6
60,849 - Ac3H11_1117 0.81 +1.4
60,849 - Ac3H11_1117 0.81 -0.1
60,849 - Ac3H11_1117 0.81 +0.0
61,177 + +0.1
61,177 + -0.7
61,177 + -1.9
61,177 + +0.0
61,790 + -0.2
61,790 + -0.4
61,791 - +1.1
61,791 - +0.1
61,838 + -0.2
61,839 - +2.3
61,918 + Ac3H11_1119 0.10 +0.6
61,918 + Ac3H11_1119 0.10 +1.7
61,919 - Ac3H11_1119 0.11 +0.9
61,921 + Ac3H11_1119 0.11 -0.8
61,921 + Ac3H11_1119 0.11 -3.2
61,921 + Ac3H11_1119 0.11 -2.3
61,922 - Ac3H11_1119 0.12 -0.5
61,922 - Ac3H11_1119 0.12 +1.0
61,922 - Ac3H11_1119 0.12 -0.6
61,973 + Ac3H11_1119 0.30 +1.9
61,973 + Ac3H11_1119 0.30 -0.6
61,974 - Ac3H11_1119 0.30 +0.9
61,974 - Ac3H11_1119 0.30 -0.7
61,974 - Ac3H11_1119 0.30 +1.6
61,974 - Ac3H11_1119 0.30 -0.5
62,067 - Ac3H11_1119 0.63 -1.1

Or see this region's nucleotide sequence