Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13050

Experiment: Cholin acetate 19 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13045 and AO353_13050 overlap by 1 nucleotidesAO353_13050 and AO353_13055 are separated by 78 nucleotides AO353_13045: AO353_13045 - DNA topoisomerase IV, at 2,888,221 to 2,890,125 _13045 AO353_13050: AO353_13050 - DNA topoisomerase IV, at 2,890,125 to 2,891,108 _13050 AO353_13055: AO353_13055 - DNA topoisomerase IV, at 2,891,187 to 2,893,451 _13055 Position (kb) 2890 2891 2892Strain fitness (log2 ratio) -1 0 1at 2890.308 kb on + strand, within AO353_13050at 2890.309 kb on - strand, within AO353_13050at 2890.320 kb on - strand, within AO353_13050at 2890.485 kb on + strand, within AO353_13050at 2890.654 kb on + strand, within AO353_13050at 2890.654 kb on + strand, within AO353_13050at 2890.654 kb on + strand, within AO353_13050at 2890.654 kb on + strand, within AO353_13050at 2890.654 kb on + strand, within AO353_13050at 2890.654 kb on + strand, within AO353_13050at 2890.654 kb on + strand, within AO353_13050at 2890.655 kb on - strand, within AO353_13050at 2890.655 kb on - strand, within AO353_13050at 2890.655 kb on - strand, within AO353_13050at 2890.951 kb on - strand, within AO353_13050at 2890.963 kb on - strand, within AO353_13050at 2891.111 kb on - strandat 2891.111 kb on - strandat 2891.131 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 19 mM
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2,890,308 + AO353_13050 0.19 +0.3
2,890,309 - AO353_13050 0.19 -0.5
2,890,320 - AO353_13050 0.20 -1.7
2,890,485 + AO353_13050 0.37 +0.3
2,890,654 + AO353_13050 0.54 -0.8
2,890,654 + AO353_13050 0.54 -1.6
2,890,654 + AO353_13050 0.54 -0.7
2,890,654 + AO353_13050 0.54 +0.6
2,890,654 + AO353_13050 0.54 -1.0
2,890,654 + AO353_13050 0.54 -1.7
2,890,654 + AO353_13050 0.54 +0.1
2,890,655 - AO353_13050 0.54 +1.0
2,890,655 - AO353_13050 0.54 +1.3
2,890,655 - AO353_13050 0.54 -0.7
2,890,951 - AO353_13050 0.84 -1.1
2,890,963 - AO353_13050 0.85 +0.3
2,891,111 - +0.7
2,891,111 - -0.4
2,891,131 + +1.7

Or see this region's nucleotide sequence