Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04395

Experiment: Cholin acetate 19 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04390 and AO353_04395 are separated by 208 nucleotidesAO353_04395 and AO353_04400 are separated by 12 nucleotides AO353_04390: AO353_04390 - RNA-binding protein, at 945,021 to 946,397 _04390 AO353_04395: AO353_04395 - cytochrome C assembly protein, at 946,606 to 947,418 _04395 AO353_04400: AO353_04400 - transporter, at 947,431 to 948,696 _04400 Position (kb) 946 947 948Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 946.432 kb on - strandat 946.497 kb on - strandat 946.497 kb on - strandat 946.497 kb on - strandat 946.564 kb on + strandat 946.564 kb on + strandat 946.564 kb on + strandat 946.564 kb on + strandat 946.565 kb on - strandat 946.565 kb on - strandat 946.596 kb on - strandat 946.605 kb on + strandat 946.605 kb on + strandat 946.605 kb on + strandat 946.605 kb on + strandat 946.605 kb on + strandat 946.605 kb on + strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.606 kb on - strandat 946.655 kb on + strandat 946.655 kb on + strandat 946.655 kb on + strandat 946.656 kb on - strandat 946.656 kb on - strandat 946.656 kb on - strandat 946.656 kb on - strandat 946.656 kb on - strandat 946.656 kb on - strandat 946.656 kb on - strandat 946.657 kb on + strandat 946.658 kb on - strandat 946.658 kb on - strandat 946.658 kb on - strandat 946.658 kb on - strandat 946.658 kb on - strandat 946.658 kb on - strandat 946.675 kb on + strandat 946.998 kb on + strand, within AO353_04395at 947.374 kb on + strandat 947.437 kb on - strandat 947.448 kb on - strandat 947.448 kb on - strandat 947.448 kb on - strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.528 kb on + strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.529 kb on - strandat 947.613 kb on + strand, within AO353_04400at 947.614 kb on - strand, within AO353_04400at 947.636 kb on + strand, within AO353_04400at 947.723 kb on + strand, within AO353_04400at 947.724 kb on - strand, within AO353_04400at 947.724 kb on - strand, within AO353_04400at 947.724 kb on - strand, within AO353_04400at 947.724 kb on - strand, within AO353_04400at 947.724 kb on - strand, within AO353_04400at 947.735 kb on - strand, within AO353_04400at 947.816 kb on + strand, within AO353_04400at 947.817 kb on - strand, within AO353_04400at 947.822 kb on - strand, within AO353_04400at 948.156 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.319 kb on + strand, within AO353_04400at 948.319 kb on + strand, within AO353_04400at 948.319 kb on + strand, within AO353_04400at 948.320 kb on - strand, within AO353_04400at 948.329 kb on + strand, within AO353_04400at 948.329 kb on + strand, within AO353_04400at 948.329 kb on + strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 19 mM
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946,432 - -0.3
946,497 - +0.7
946,497 - +0.4
946,497 - +0.0
946,564 + +0.3
946,564 + -0.7
946,564 + -0.4
946,564 + -0.1
946,565 - -0.1
946,565 - -1.7
946,596 - +2.0
946,605 + -1.4
946,605 + +2.0
946,605 + -1.1
946,605 + -0.3
946,605 + -1.0
946,605 + +0.4
946,606 - +0.6
946,606 - +0.9
946,606 - +0.0
946,606 - -0.7
946,606 - -1.5
946,606 - -0.2
946,606 - +1.6
946,606 - +0.4
946,606 - +0.9
946,655 + -1.2
946,655 + +1.3
946,655 + +0.0
946,656 - -0.2
946,656 - +1.8
946,656 - +0.3
946,656 - +0.0
946,656 - -0.6
946,656 - -0.6
946,656 - -1.3
946,657 + +0.3
946,658 - -1.2
946,658 - +0.1
946,658 - -0.4
946,658 - +0.4
946,658 - -1.6
946,658 - -2.6
946,675 + -0.3
946,998 + AO353_04395 0.48 +0.6
947,374 + -1.1
947,437 - +0.0
947,448 - +1.0
947,448 - -0.3
947,448 - +1.0
947,528 + +0.0
947,528 + -0.5
947,528 + +2.0
947,528 + +0.4
947,528 + +0.0
947,528 + -0.9
947,528 + +0.3
947,528 + -1.8
947,529 - -0.5
947,529 - -0.7
947,529 - +0.6
947,529 - +1.0
947,529 - -0.1
947,529 - -0.3
947,529 - +0.2
947,529 - +0.2
947,529 - +0.0
947,529 - +0.5
947,529 - +1.0
947,529 - +1.2
947,529 - -0.2
947,529 - +0.3
947,529 - -2.8
947,529 - +0.0
947,529 - -0.7
947,529 - +2.0
947,529 - -1.2
947,529 - +1.0
947,613 + AO353_04400 0.14 +0.4
947,614 - AO353_04400 0.14 +0.4
947,636 + AO353_04400 0.16 +0.4
947,723 + AO353_04400 0.23 -1.2
947,724 - AO353_04400 0.23 -0.2
947,724 - AO353_04400 0.23 +0.7
947,724 - AO353_04400 0.23 -0.6
947,724 - AO353_04400 0.23 -2.6
947,724 - AO353_04400 0.23 +0.3
947,735 - AO353_04400 0.24 -0.9
947,816 + AO353_04400 0.30 +0.7
947,817 - AO353_04400 0.30 +0.4
947,822 - AO353_04400 0.31 -0.6
948,156 + AO353_04400 0.57 +1.4
948,232 + AO353_04400 0.63 -1.0
948,232 + AO353_04400 0.63 +0.4
948,232 + AO353_04400 0.63 +1.0
948,232 + AO353_04400 0.63 -0.5
948,232 + AO353_04400 0.63 +0.8
948,232 + AO353_04400 0.63 +0.3
948,232 + AO353_04400 0.63 +0.5
948,233 - AO353_04400 0.63 -2.4
948,233 - AO353_04400 0.63 +0.8
948,233 - AO353_04400 0.63 +0.2
948,233 - AO353_04400 0.63 -0.6
948,233 - AO353_04400 0.63 -1.4
948,233 - AO353_04400 0.63 -0.7
948,233 - AO353_04400 0.63 +0.9
948,233 - AO353_04400 0.63 -1.3
948,233 - AO353_04400 0.63 +1.0
948,233 - AO353_04400 0.63 +0.4
948,233 - AO353_04400 0.63 +1.4
948,319 + AO353_04400 0.70 +0.0
948,319 + AO353_04400 0.70 -2.0
948,319 + AO353_04400 0.70 -0.9
948,320 - AO353_04400 0.70 +1.0
948,329 + AO353_04400 0.71 -0.6
948,329 + AO353_04400 0.71 -1.0
948,329 + AO353_04400 0.71 +0.0
948,330 - AO353_04400 0.71 +0.7
948,330 - AO353_04400 0.71 +0.4
948,330 - AO353_04400 0.71 -0.1
948,330 - AO353_04400 0.71 +0.1
948,330 - AO353_04400 0.71 +0.3
948,330 - AO353_04400 0.71 -1.2

Or see this region's nucleotide sequence