Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02890

Experiment: Cholin acetate 19 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02880 and AO353_02885 are separated by 48 nucleotidesAO353_02885 and AO353_02890 are separated by 95 nucleotidesAO353_02890 and AO353_02895 are separated by 56 nucleotides AO353_02880: AO353_02880 - flagellar biosynthesis anti-sigma factor FlgM, at 611,971 to 612,297 _02880 AO353_02885: AO353_02885 - flagellar biosynthesis protein FlgN, at 612,346 to 612,813 _02885 AO353_02890: AO353_02890 - pilus assembly protein PilZ, at 612,909 to 613,655 _02890 AO353_02895: AO353_02895 - MFS transporter, at 613,712 to 615,100 _02895 Position (kb) 612 613 614Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 611.993 kb on + strandat 612.238 kb on + strand, within AO353_02880at 612.276 kb on + strandat 612.277 kb on - strandat 612.277 kb on - strandat 612.277 kb on - strandat 612.328 kb on + strandat 612.328 kb on + strandat 612.329 kb on - strandat 612.329 kb on - strandat 612.362 kb on + strandat 612.362 kb on + strandat 612.363 kb on - strandat 612.363 kb on - strandat 612.363 kb on - strandat 612.363 kb on - strandat 612.597 kb on + strand, within AO353_02885at 612.754 kb on + strand, within AO353_02885at 612.755 kb on - strand, within AO353_02885at 612.755 kb on - strand, within AO353_02885at 612.819 kb on + strandat 612.820 kb on - strandat 612.820 kb on - strandat 612.820 kb on - strandat 612.820 kb on - strandat 612.820 kb on - strandat 612.823 kb on + strandat 612.823 kb on + strandat 612.823 kb on + strandat 612.824 kb on - strandat 612.824 kb on - strandat 612.824 kb on - strandat 612.824 kb on - strandat 612.824 kb on - strandat 612.824 kb on - strandat 612.824 kb on - strandat 612.824 kb on - strandat 612.834 kb on + strandat 612.834 kb on + strandat 612.884 kb on + strandat 612.884 kb on + strandat 612.884 kb on + strandat 612.884 kb on + strandat 612.885 kb on - strandat 612.885 kb on - strandat 612.903 kb on + strandat 612.903 kb on + strandat 612.904 kb on - strandat 613.059 kb on + strand, within AO353_02890at 613.059 kb on + strand, within AO353_02890at 613.059 kb on + strand, within AO353_02890at 613.059 kb on + strand, within AO353_02890at 613.060 kb on - strand, within AO353_02890at 613.180 kb on + strand, within AO353_02890at 613.180 kb on + strand, within AO353_02890at 613.180 kb on + strand, within AO353_02890at 613.180 kb on + strand, within AO353_02890at 613.180 kb on + strand, within AO353_02890at 613.181 kb on - strand, within AO353_02890at 613.181 kb on - strand, within AO353_02890at 613.181 kb on - strand, within AO353_02890at 613.184 kb on + strand, within AO353_02890at 613.184 kb on + strand, within AO353_02890at 613.184 kb on + strand, within AO353_02890at 613.184 kb on + strand, within AO353_02890at 613.184 kb on + strand, within AO353_02890at 613.184 kb on + strand, within AO353_02890at 613.184 kb on + strand, within AO353_02890at 613.184 kb on + strand, within AO353_02890at 613.184 kb on + strand, within AO353_02890at 613.184 kb on + strand, within AO353_02890at 613.184 kb on + strand, within AO353_02890at 613.185 kb on - strand, within AO353_02890at 613.185 kb on - strand, within AO353_02890at 613.185 kb on - strand, within AO353_02890at 613.185 kb on - strand, within AO353_02890at 613.185 kb on - strand, within AO353_02890at 613.185 kb on - strand, within AO353_02890at 613.243 kb on - strand, within AO353_02890at 613.273 kb on - strand, within AO353_02890at 613.273 kb on - strand, within AO353_02890at 613.324 kb on + strand, within AO353_02890at 613.382 kb on + strand, within AO353_02890at 613.383 kb on - strand, within AO353_02890at 613.452 kb on + strand, within AO353_02890at 613.452 kb on + strand, within AO353_02890at 613.452 kb on + strand, within AO353_02890at 613.452 kb on + strand, within AO353_02890at 613.452 kb on + strand, within AO353_02890at 613.452 kb on + strand, within AO353_02890at 613.453 kb on - strand, within AO353_02890at 613.453 kb on - strand, within AO353_02890at 613.512 kb on + strand, within AO353_02890at 613.513 kb on - strand, within AO353_02890at 613.513 kb on - strand, within AO353_02890at 613.555 kb on + strand, within AO353_02890at 613.609 kb on - strandat 613.609 kb on - strandat 613.997 kb on + strand, within AO353_02895at 613.998 kb on - strand, within AO353_02895at 614.006 kb on + strand, within AO353_02895at 614.006 kb on + strand, within AO353_02895at 614.007 kb on - strand, within AO353_02895at 614.007 kb on - strand, within AO353_02895at 614.031 kb on + strand, within AO353_02895at 614.031 kb on + strand, within AO353_02895at 614.032 kb on - strand, within AO353_02895at 614.032 kb on - strand, within AO353_02895at 614.103 kb on + strand, within AO353_02895at 614.103 kb on + strand, within AO353_02895at 614.103 kb on + strand, within AO353_02895at 614.103 kb on + strand, within AO353_02895at 614.103 kb on + strand, within AO353_02895at 614.104 kb on - strand, within AO353_02895at 614.104 kb on - strand, within AO353_02895at 614.104 kb on - strand, within AO353_02895at 614.104 kb on - strand, within AO353_02895at 614.104 kb on - strand, within AO353_02895at 614.224 kb on + strand, within AO353_02895at 614.309 kb on + strand, within AO353_02895at 614.322 kb on + strand, within AO353_02895at 614.323 kb on - strand, within AO353_02895at 614.430 kb on + strand, within AO353_02895at 614.430 kb on + strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.448 kb on + strand, within AO353_02895at 614.448 kb on + strand, within AO353_02895at 614.448 kb on + strand, within AO353_02895at 614.448 kb on + strand, within AO353_02895at 614.448 kb on + strand, within AO353_02895at 614.448 kb on + strand, within AO353_02895at 614.449 kb on - strand, within AO353_02895at 614.449 kb on - strand, within AO353_02895at 614.449 kb on - strand, within AO353_02895at 614.486 kb on - strand, within AO353_02895

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 19 mM
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611,993 + -0.2
612,238 + AO353_02880 0.82 -0.6
612,276 + -0.0
612,277 - -0.8
612,277 - -0.9
612,277 - -0.7
612,328 + +0.7
612,328 + -1.8
612,329 - +0.2
612,329 - +0.5
612,362 + +0.4
612,362 + +0.3
612,363 - +0.1
612,363 - +0.1
612,363 - +0.3
612,363 - -0.3
612,597 + AO353_02885 0.54 +0.3
612,754 + AO353_02885 0.87 -0.7
612,755 - AO353_02885 0.87 +0.5
612,755 - AO353_02885 0.87 -0.3
612,819 + -0.8
612,820 - +2.2
612,820 - +0.4
612,820 - +0.4
612,820 - -1.3
612,820 - -0.0
612,823 + -1.0
612,823 + +1.3
612,823 + +1.2
612,824 - +0.4
612,824 - +1.0
612,824 - +0.9
612,824 - -1.0
612,824 - +1.1
612,824 - -1.0
612,824 - +0.5
612,824 - +0.6
612,834 + -0.5
612,834 + +0.6
612,884 + +0.8
612,884 + -0.0
612,884 + +1.0
612,884 + +0.7
612,885 - +1.0
612,885 - +0.3
612,903 + +2.6
612,903 + -0.2
612,904 - -0.8
613,059 + AO353_02890 0.20 +1.5
613,059 + AO353_02890 0.20 +2.7
613,059 + AO353_02890 0.20 -0.6
613,059 + AO353_02890 0.20 +1.7
613,060 - AO353_02890 0.20 +2.0
613,180 + AO353_02890 0.36 -0.4
613,180 + AO353_02890 0.36 -0.3
613,180 + AO353_02890 0.36 +0.8
613,180 + AO353_02890 0.36 +1.8
613,180 + AO353_02890 0.36 +0.6
613,181 - AO353_02890 0.36 +2.3
613,181 - AO353_02890 0.36 +2.4
613,181 - AO353_02890 0.36 +0.7
613,184 + AO353_02890 0.37 -1.6
613,184 + AO353_02890 0.37 +0.8
613,184 + AO353_02890 0.37 -0.2
613,184 + AO353_02890 0.37 +1.6
613,184 + AO353_02890 0.37 -0.0
613,184 + AO353_02890 0.37 +0.9
613,184 + AO353_02890 0.37 +2.1
613,184 + AO353_02890 0.37 +3.0
613,184 + AO353_02890 0.37 -0.6
613,184 + AO353_02890 0.37 +2.1
613,184 + AO353_02890 0.37 +3.2
613,185 - AO353_02890 0.37 +0.2
613,185 - AO353_02890 0.37 -0.3
613,185 - AO353_02890 0.37 +1.3
613,185 - AO353_02890 0.37 +2.6
613,185 - AO353_02890 0.37 +1.1
613,185 - AO353_02890 0.37 -0.2
613,243 - AO353_02890 0.45 +1.1
613,273 - AO353_02890 0.49 +1.7
613,273 - AO353_02890 0.49 -0.0
613,324 + AO353_02890 0.56 +0.5
613,382 + AO353_02890 0.63 -2.0
613,383 - AO353_02890 0.63 -0.8
613,452 + AO353_02890 0.73 +1.8
613,452 + AO353_02890 0.73 -0.6
613,452 + AO353_02890 0.73 +0.8
613,452 + AO353_02890 0.73 +0.2
613,452 + AO353_02890 0.73 +0.9
613,452 + AO353_02890 0.73 -0.4
613,453 - AO353_02890 0.73 +0.5
613,453 - AO353_02890 0.73 +0.4
613,512 + AO353_02890 0.81 +2.4
613,513 - AO353_02890 0.81 +1.3
613,513 - AO353_02890 0.81 +1.5
613,555 + AO353_02890 0.86 +0.2
613,609 - -0.0
613,609 - -0.6
613,997 + AO353_02895 0.21 +0.3
613,998 - AO353_02895 0.21 -1.3
614,006 + AO353_02895 0.21 +1.4
614,006 + AO353_02895 0.21 -0.4
614,007 - AO353_02895 0.21 +2.3
614,007 - AO353_02895 0.21 -1.0
614,031 + AO353_02895 0.23 -1.3
614,031 + AO353_02895 0.23 -0.2
614,032 - AO353_02895 0.23 +0.7
614,032 - AO353_02895 0.23 -0.6
614,103 + AO353_02895 0.28 +0.9
614,103 + AO353_02895 0.28 -1.7
614,103 + AO353_02895 0.28 -1.2
614,103 + AO353_02895 0.28 +0.3
614,103 + AO353_02895 0.28 -0.6
614,104 - AO353_02895 0.28 -0.4
614,104 - AO353_02895 0.28 -0.9
614,104 - AO353_02895 0.28 +0.6
614,104 - AO353_02895 0.28 -0.5
614,104 - AO353_02895 0.28 +1.7
614,224 + AO353_02895 0.37 -0.0
614,309 + AO353_02895 0.43 -0.5
614,322 + AO353_02895 0.44 -1.3
614,323 - AO353_02895 0.44 -2.3
614,430 + AO353_02895 0.52 -0.6
614,430 + AO353_02895 0.52 +0.8
614,431 - AO353_02895 0.52 +0.3
614,431 - AO353_02895 0.52 +0.3
614,431 - AO353_02895 0.52 -0.6
614,431 - AO353_02895 0.52 +1.0
614,431 - AO353_02895 0.52 -0.6
614,431 - AO353_02895 0.52 +0.1
614,431 - AO353_02895 0.52 -2.0
614,431 - AO353_02895 0.52 -0.0
614,431 - AO353_02895 0.52 +0.7
614,448 + AO353_02895 0.53 -0.4
614,448 + AO353_02895 0.53 -1.8
614,448 + AO353_02895 0.53 -0.2
614,448 + AO353_02895 0.53 +0.3
614,448 + AO353_02895 0.53 +3.8
614,448 + AO353_02895 0.53 -1.7
614,449 - AO353_02895 0.53 -1.3
614,449 - AO353_02895 0.53 +0.6
614,449 - AO353_02895 0.53 +1.5
614,486 - AO353_02895 0.56 -0.0

Or see this region's nucleotide sequence