Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3499 and Shewana3_3500 are separated by 122 nucleotides Shewana3_3500 and gcvT are separated by 25 nucleotides gcvT and Shewana3_3502 are separated by 398 nucleotides
Shewana3_3499: Shewana3_3499 - glycine dehydrogenase (RefSeq), at 4,198,244 to 4,201,132
_3499
Shewana3_3500: Shewana3_3500 - glycine cleavage system protein H (RefSeq), at 4,201,255 to 4,201,644
_3500
Shewana3_3501: gcvT - glycine cleavage system aminomethyltransferase T (RefSeq), at 4,201,670 to 4,202,764
gcvT
Shewana3_3502: Shewana3_3502 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (RefSeq), at 4,203,163 to 4,204,386
_3502
Position (kb) 4201
4202
4203 Strain fitness (log2 ratio) -2
-1
0
1 at 4200.925 kb on - strand at 4200.930 kb on + strand at 4201.140 kb on - strand at 4201.237 kb on - strand at 4201.297 kb on - strand, within Shewana3_3500 at 4201.540 kb on - strand, within Shewana3_3500 at 4201.547 kb on - strand, within Shewana3_3500 at 4201.943 kb on + strand, within gcvT at 4202.126 kb on + strand, within gcvT at 4202.134 kb on - strand, within gcvT at 4202.288 kb on - strand, within gcvT at 4202.298 kb on + strand, within gcvT at 4202.423 kb on + strand, within gcvT at 4202.431 kb on - strand, within gcvT at 4202.446 kb on - strand, within gcvT at 4202.518 kb on - strand, within gcvT at 4202.594 kb on - strand, within gcvT at 4202.649 kb on + strand, within gcvT at 4202.710 kb on - strand at 4202.793 kb on + strand at 4202.805 kb on + strand at 4202.924 kb on + strand at 4202.962 kb on + strand at 4202.962 kb on + strand at 4203.647 kb on - strand, within Shewana3_3502
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 4,200,925 - -0.0 4,200,930 + +0.8 4,201,140 - -0.5 4,201,237 - -0.2 4,201,297 - Shewana3_3500 0.11 -0.4 4,201,540 - Shewana3_3500 0.73 +0.2 4,201,547 - Shewana3_3500 0.75 +0.2 4,201,943 + gcvT Shewana3_3501 0.25 +1.0 4,202,126 + gcvT Shewana3_3501 0.42 -1.6 4,202,134 - gcvT Shewana3_3501 0.42 +0.1 4,202,288 - gcvT Shewana3_3501 0.56 -1.0 4,202,298 + gcvT Shewana3_3501 0.57 -0.6 4,202,423 + gcvT Shewana3_3501 0.69 +0.4 4,202,431 - gcvT Shewana3_3501 0.69 -0.1 4,202,446 - gcvT Shewana3_3501 0.71 +0.4 4,202,518 - gcvT Shewana3_3501 0.77 -1.8 4,202,594 - gcvT Shewana3_3501 0.84 -0.0 4,202,649 + gcvT Shewana3_3501 0.89 -0.8 4,202,710 - -0.5 4,202,793 + -0.4 4,202,805 + -0.6 4,202,924 + +0.2 4,202,962 + -0.3 4,202,962 + +0.2 4,203,647 - Shewana3_3502 0.40 -2.5
Or see this region's nucleotide sequence