Experiment: A22 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3046 and Shewana3_3047 are separated by 218 nucleotides Shewana3_3047 and Shewana3_3048 are separated by 185 nucleotides Shewana3_3048 and Shewana3_3049 overlap by 1 nucleotides Shewana3_3049 and gltB are separated by 348 nucleotides
Shewana3_3046: Shewana3_3046 - LysR family transcriptional regulator (RefSeq), at 3,651,019 to 3,651,930
_3046
Shewana3_3047: Shewana3_3047 - Hpt protein (RefSeq), at 3,652,149 to 3,652,514
_3047
Shewana3_3048: Shewana3_3048 - putative radical SAM protein (RefSeq), at 3,652,700 to 3,653,629
_3048
Shewana3_3049: Shewana3_3049 - no description, at 3,653,629 to 3,653,868
_3049
Shewana3_3050: gltB - glutamate synthase subunit alpha (RefSeq), at 3,654,217 to 3,658,665
gltB
Position (kb)
3652
3653
3654 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3652.020 kb on - strand at 3652.061 kb on - strand at 3652.142 kb on + strand at 3652.161 kb on - strand at 3652.161 kb on - strand at 3652.161 kb on - strand at 3652.521 kb on - strand at 3652.523 kb on + strand at 3652.531 kb on - strand at 3652.531 kb on - strand at 3652.531 kb on - strand at 3652.590 kb on - strand at 3652.709 kb on + strand at 3652.709 kb on + strand at 3652.726 kb on + strand at 3652.868 kb on - strand, within Shewana3_3048 at 3652.894 kb on + strand, within Shewana3_3048 at 3652.902 kb on - strand, within Shewana3_3048 at 3652.902 kb on - strand, within Shewana3_3048 at 3652.909 kb on + strand, within Shewana3_3048 at 3652.912 kb on - strand, within Shewana3_3048 at 3652.912 kb on - strand, within Shewana3_3048 at 3652.957 kb on - strand, within Shewana3_3048 at 3652.983 kb on - strand, within Shewana3_3048 at 3653.059 kb on - strand, within Shewana3_3048 at 3653.082 kb on - strand, within Shewana3_3048 at 3653.144 kb on - strand, within Shewana3_3048 at 3653.154 kb on + strand, within Shewana3_3048 at 3653.343 kb on - strand, within Shewana3_3048 at 3653.414 kb on + strand, within Shewana3_3048 at 3653.445 kb on - strand, within Shewana3_3048 at 3653.542 kb on - strand at 3654.547 kb on + strand at 3654.555 kb on - strand at 3654.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.008 mg/ml remove 3,652,020 - +2.3 3,652,061 - -1.5 3,652,142 + +0.7 3,652,161 - +0.4 3,652,161 - -0.7 3,652,161 - -0.6 3,652,521 - +0.7 3,652,523 + +0.7 3,652,531 - -0.3 3,652,531 - +0.1 3,652,531 - +0.2 3,652,590 - +0.2 3,652,709 + +0.7 3,652,709 + +0.7 3,652,726 + +0.7 3,652,868 - Shewana3_3048 0.18 +0.3 3,652,894 + Shewana3_3048 0.21 -0.3 3,652,902 - Shewana3_3048 0.22 -0.2 3,652,902 - Shewana3_3048 0.22 +0.2 3,652,909 + Shewana3_3048 0.22 +3.5 3,652,912 - Shewana3_3048 0.23 +0.3 3,652,912 - Shewana3_3048 0.23 +0.6 3,652,957 - Shewana3_3048 0.28 +0.4 3,652,983 - Shewana3_3048 0.30 +1.3 3,653,059 - Shewana3_3048 0.39 +0.3 3,653,082 - Shewana3_3048 0.41 -0.1 3,653,144 - Shewana3_3048 0.48 -0.1 3,653,154 + Shewana3_3048 0.49 -0.8 3,653,343 - Shewana3_3048 0.69 -0.2 3,653,414 + Shewana3_3048 0.77 -0.6 3,653,445 - Shewana3_3048 0.80 +0.7 3,653,542 - +0.2 3,654,547 + -0.6 3,654,555 - -0.7 3,654,620 - -0.2
Or see this region's nucleotide sequence